Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1484g00010 ATGTCATTGAAAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATAGCTCCGGATGTCCTTGTAACTCCAAATGAACCTATTCAACAGGGTCAATGGGCAAATCTACCACCAGAATTGCTTTTGGACATAATCCATAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGGGCTGTTGTTGTTTTTTGTGGTTCGGTATGTAAATCATGGAGGTCCATTACAAAAGAGATTGTCAAGACACCTGAACAATGTGGAAGGATTACATTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAATAGAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTGCCATCGGAGAATGAGAGTAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGAGCAACAGGCACCGACTTTGTCATATCCTTGACTGCAGATGATTTTTCTCGGGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGAACCAAGTTCACTATATTTGACAGTCAACCTCCAAATGATGCTGCATTTCAACCAAATTGTCGTTCCAGTAGGAGATTTAACTCTAAGCAGGTATCACCAAGAGTTCCAGCATGTAACTATCTTGTTAGCACTGTTTCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCAAGAAGAATGCACTGCATCATGAACTCCGTACCTGTCTCAGCTATTCAGGAAGGGGGCAACGCCCCAACTCCAACATCTTTCCCTCAAATATTTGATGAACCTCTTTCTCCCTCACCAGCACTGAAAGGAAAAGGCCCAATTACAGATTTAAACTCTGCAAGCCTATCAGAGCTACCAGTATCGAGCCAAGGCTCAGTTGAGCATTTGGTACTAAAAAACAAGGCTCCCAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCTAGACAAGGTAATCTTGCAGTTTGGAAAAATTGGAAAAGACATATTTACCATGGATTACCGTTATCCGCTCTCCGCCTTTCAGGCTTTTGCCATCTGCTTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1182 0.4323 MSLKSIVRELKEMRDGIAPDVLVTPNEPIQQGQWANLPPELLLDIIHRVEESETSWPARAVVVFCGSVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYFGLVPSENESNKLLLAAKRIRRATGTDFVISLTADDFSRASNKYVGKLRSNFLGTKFTIFDSQPPNDAAFQPNCRSSRRFNSKQVSPRVPACNYLVSTVSYELNVLRTRGPRRMHCIMNSVPVSAIQEGGNAPTPTSFPQIFDEPLSPSPALKGKGPITDLNSASLSELPVSSQGSVEHLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAELDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1484g00010 393 PANTHER TUBBY-RELATED 16 391 - -
Gabi1484g00010 393 CDD F-box_AtTLP-like 34 78 - -
Gabi1484g00010 393 ProSitePatterns Tub family signature 1. 321 334 IPR018066 -
Gabi1484g00010 393 Gene3D Tubby Protein; Chain A 92 393 IPR025659 -
Gabi1484g00010 393 FunFam Tubby-like F-box protein 91 393 - -
Gabi1484g00010 393 Gene3D - 27 81 - -
Gabi1484g00010 393 PRINTS Tubby superfamily signature 214 241 IPR000007 -
Gabi1484g00010 393 PRINTS Tubby superfamily signature 321 337 IPR000007 -
Gabi1484g00010 393 PRINTS Tubby superfamily signature 149 165 IPR000007 -
Gabi1484g00010 393 PRINTS Tubby superfamily signature 371 393 IPR000007 -
Gabi1484g00010 393 PRINTS Tubby superfamily signature 165 189 IPR000007 -
Gabi1484g00010 393 PRINTS Tubby superfamily signature 350 369 IPR000007 -
Gabi1484g00010 393 PRINTS Tubby superfamily signature 303 320 IPR000007 -
Gabi1484g00010 393 Pfam Tub family 95 388 IPR000007 -
Gabi1484g00010 393 Pfam F-box domain 34 81 IPR001810 GO:0005515
Gabi1484g00010 393 SUPERFAMILY Tubby C-terminal domain-like 83 393 IPR025659 -
Gabi1484g00010 393 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515
Gabi1484g00010 393 ProSitePatterns Tub family signature 2. 378 393 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1484g00010 Gabi-Chr1484 161627 164766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1484g00010 1 393 TUB Transcription Factor Family AT2G18280 63.592 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi1484g00010 Tub 3.7e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1484g00010 K19600 - gmx:100805380 703.745