Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1483g00008 ATGGATAAGGAGGAGGAGAGATTCAGAGAGAAACTGAAGATAAAGAGCAAGTCCAAGTTTGTTGGGGTGAGACAAAGAGCTTCTGGGAAATGGGCTGCAGAGATCAAAGACACATCAAAGAAGATTAGAATGTGGCTTGGAACCTATCAAACTGCTGAGGAAGCTGCTAAAGCTTATGATGAGGCTGCTTTCCTCCTTCGAGGTTCAAACACTCGCACCAACTTCTCTACTCATGCAATTGCTGCTAATTCTCCTATCTCTCTCAAACTCAGAAACCTCCTTGATCGTAAAGGCATCTCAAATCAAATTCAAATTCAAAACCAGTCCACTGTCCAAGGTTCTTCTACTGCACCTAGTTCAAATGGTAGTGCCATTAACAGCATCATGGTCACCAAAGACAACTCTGCATGTAGCAATGAAGTTGATTCTTTGTTTTGGGTTCAGAACCAAGTCTCTGATAATCCATATGGGATAGATATGAATATGATAAACTGCTCGATTGGTATTGCACCAAATACATCACAGTTTGATTATTCTTGGCCATTAGCCCATCAAAGGATTAGCGAGTTACCAATACCAAAAGATGGTTTGAATGAATGCTATGTGGAGGATACATATAAGTATGAATATGATGTCAATTATCCTCTCTCCAATTTTTTCTGCTTCACTTGA 672 0.4003 MDKEEERFREKLKIKSKSKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAAKAYDEAAFLLRGSNTRTNFSTHAIAANSPISLKLRNLLDRKGISNQIQIQNQSTVQGSSTAPSSNGSAINSIMVTKDNSACSNEVDSLFWVQNQVSDNPYGIDMNMINCSIGIAPNTSQFDYSWPLAHQRISELPIPKDGLNECYVEDTYKYEYDVNYPLSNFFCFT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1483g00008 223 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 119 - -
Gabi1483g00008 223 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Gabi1483g00008 223 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Gabi1483g00008 223 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Gabi1483g00008 223 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Gabi1483g00008 223 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Gabi1483g00008 223 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Gabi1483g00008 223 CDD AP2 18 75 IPR001471 GO:0003700|GO:0006355
Gabi1483g00008 223 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Gabi1483g00008 223 FunFam ethylene-responsive transcription factor RAP2-11 18 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1483g00008 Gabi-Chr1483 56625 57392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1483g00008 9 94 AP2-EREBP Transcription Factor Family AT5G19790 71.910 1.94e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1483g00008 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1483g00008 K09286 - gmx:100803832 295.819