Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1481g00005 ATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTCAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATATTGGTGTCTCATATACAGGAACATGGTCCTGGCAATTGGAAAGCTGTTCCCACCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTTAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCTATAGCTGCATACCTTCCACAGAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAAAAGAGGCTCAAGAAATTGGAAACAGGTTCTGAAGGAAGCTTGGGACATGGTTTTTCAGCTTCTCAACCAATGCCTCGAGGTCAATGGGAAAGAAGGCTCCAAACTGATATCCACATGGCCAAAAGAGCTCTTAGTGAGGCTCTTTCACCAAACAAGACACCTTGCTTACCAGAATCAAATCTTTCCAATGGTGGCTCTTTCTGTACCATTAAACCAACACAGTCTTCAAGCTATGCTTCAAGTGCTGATAACATTGCTCGTTTGCTGAAAGGGTGGATGAAAAATGCACCAAAGGCCTCATGTGCTAACTCAGCTATGACACAGAATTCCTTTAATAACTTGGCTTATGCAGGGAATGACACTGCTTCTAGTGAAGGAACCACAAGTTGGGGGGCAAAGGGAAACAACAATGTTGAGTTATCTGAGACTTTTGAATCTTTGTTTGGTTATGAGTCTAATTTGGATTCTTCAAATTCTGAGTTTTCTCAATCTCTTTCCCCTGAGGCTACTCTTTTCCAAGATGTGAGCAAACCAGATGATGATGCTAATGCAGAAATGCCCTTCTTTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTTGTCAAGAAAAAAGTAGCTGCAGTGATATTACAGCTTATGCAGTTACCAATATGTTTTAG 999 0.4124 MGRPPCCDKEGVKKGPWTPEEDIILVSHIQEHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKRLKKLETGSEGSLGHGFSASQPMPRGQWERRLQTDIHMAKRALSEALSPNKTPCLPESNLSNGGSFCTIKPTQSSSYASSADNIARLLKGWMKNAPKASCANSAMTQNSFNNLAYAGNDTASSEGTTSWGAKGNNNVELSETFESLFGYESNLDSSNSEFSQSLSPEATLFQDVSKPDDDANAEMPFFLLEKWLLDDAACQEKSSCSDITAYAVTNMF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1481g00005 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi1481g00005 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi1481g00005 332 CDD SANT 69 112 IPR001005 -
Gabi1481g00005 332 Gene3D - 13 66 - -
Gabi1481g00005 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi1481g00005 332 CDD SANT 16 61 IPR001005 -
Gabi1481g00005 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi1481g00005 332 FunFam MYB-related transcription factor 13 66 - -
Gabi1481g00005 332 SMART sant 66 114 IPR001005 -
Gabi1481g00005 332 SMART sant 13 63 IPR001005 -
Gabi1481g00005 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi1481g00005 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi1481g00005 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 243 - -
Gabi1481g00005 332 Gene3D - 68 127 - -
Gabi1481g00005 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1481g00005 Gabi-Chr1481 182375 183935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1481g00005 1 313 MYB Transcription Factor Family AT5G62470 50.000 2.04e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1481g00005 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1481g00005 K09422 - gmx:780542 477.633