Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1481g00004 ATGAGGAAGCGTCAAGTAGTTGTGAGAAGAGAAGAACCTCAAAGAAGCGTTAGGAGTGTGAAATATGGAGAGTGCCAAAAGAATCATGCTGCTAACGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAGTGGTGGAGAAGGAACAAGTGGTGCTCTTACTTGTGCTGCGTGTGGTTGCCACAGGAACTTTCACAAAAGAGAGGTTGAAACTGAAGTTGTGAGTGAGTGTTCATCACCTCCATCCAATGGGAATTGA 267 0.4569 MRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTSGALTCAACGCHRNFHKREVETEVVSECSSPPSNGN 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1481g00004 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Gabi1481g00004 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 75 - -
Gabi1481g00004 88 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 72 IPR006456 -
Gabi1481g00004 88 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1481g00004 Gabi-Chr1481 118437 118703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1481g00004 1 88 Zinc finger-homeobox gene family AT3G28917 69.000 1.85e-42 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi1481g00004 ZF-HD_dimer 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1481g00004 - - aprc:113868039 154.066