Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1481g00002 ATGGACATAATCACCACCACAAACACAAACACCAACACCAACACTCCTACAAGTATAACAACAGGAGCGAAATCACCAGAACCCGAACCCGAGACTCCGACCCGGATCCAACAACAACCACTACCACCCCCAAACACCATAAAGCCCTTATCTTTCTCCAACGGGGTTCTCAAGCGCCACCACCCTCACCACCCCCACCACCACCATCCCACCGTGGCGGCCACCTACAAAGAATGCTTGAAGAACCATGCAGCCAACTTGGGTGGCCACGCCTTAGACGGTTGTGGCGAGTTCATGCCCTCCCCCACCGCCACCGCCGGCGACCCCACCTCCATCAAATGCGCCGCCTGCGGCTGTCACCGGAATTTCCACCGCCGTGAACCGGACGAACTTATCTCCGCCACAACACATGTCATCGAGTACCAGCCTCACCACCGCCACCATCCTCCTCCGCCACCTCCGCCGCTGAACCGGAGCCCCAATTCAGCATCTCCGCCGCCGATCTCCTCATCCTACTATCCCTCCGCGCCCCACATGCTACTTGCACTCTCCGGCGCCGGCGGCCTCTCCGTCGCGCCGGAAAACACCGCCGCTCCGACGAGCCTCGCATCGCCGAGCCCAACAGCGAGGAAGCGGTTCAGAACCAAGTTCACTCCAGAGCAGAAGGAGAAGATGCACGAGTTTGCAGACAGGGTTGGGTGGAAGATGCAGAAGAGAGATGAAGATATGGTTATGGAGTTTTGCAATGAGGTTGGTGTTGATAGAAGTGTTCTCAAGGTTTGGATGCACAACAACAAGAACACTTATGGTAAGAGAGATAACGTTAATGTTAATGTTAATGTTAATGCCAACGGTGGTGTTGTTGGTGGGAACATTCTGGAACAAGACCACAACATTAACGCAATCAACACTGGAATCAATGGTAACGGTAACAGCAACGGCGACGACAACAACAATAACAACCTTGTCTCGCAGGATCCAAGTCAGTACGAGAATGATAGTGGGACTAATGTTGGTACTAATGGGTCTTCTTCTTCTTCTTGA 1044 0.5374 MDIITTTNTNTNTNTPTSITTGAKSPEPEPETPTRIQQQPLPPPNTIKPLSFSNGVLKRHHPHHPHHHHPTVAATYKECLKNHAANLGGHALDGCGEFMPSPTATAGDPTSIKCAACGCHRNFHRREPDELISATTHVIEYQPHHRHHPPPPPPPLNRSPNSASPPPISSSYYPSAPHMLLALSGAGGLSVAPENTAAPTSLASPSPTARKRFRTKFTPEQKEKMHEFADRVGWKMQKRDEDMVMEFCNEVGVDRSVLKVWMHNNKNTYGKRDNVNVNVNVNANGGVVGGNILEQDHNINAINTGINGNGNSNGDDNNNNNLVSQDPSQYENDSGTNVGTNGSSSSS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1481g00002 347 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 75 127 IPR006456 -
Gabi1481g00002 347 FunFam Zinc-finger homeodomain protein 2 197 271 - -
Gabi1481g00002 347 NCBIfam homeobox domain, ZF-HD class 210 267 IPR006455 -
Gabi1481g00002 347 MobiDBLite consensus disorder prediction 1 32 - -
Gabi1481g00002 347 MobiDBLite consensus disorder prediction 1 44 - -
Gabi1481g00002 347 SUPERFAMILY Homeodomain-like 201 271 IPR009057 -
Gabi1481g00002 347 MobiDBLite consensus disorder prediction 142 171 - -
Gabi1481g00002 347 MobiDBLite consensus disorder prediction 148 162 - -
Gabi1481g00002 347 MobiDBLite consensus disorder prediction 304 347 - -
Gabi1481g00002 347 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 76 127 IPR006456 -
Gabi1481g00002 347 Pfam ZF-HD protein dimerisation region 75 128 IPR006456 -
Gabi1481g00002 347 Gene3D - 198 270 - -
Gabi1481g00002 347 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1481g00002 Gabi-Chr1481 77271 78929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1481g00002 1 266 ZF-HD Transcription Factor Family AT5G15210 53.558 3.52e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi1481g00002 ZF-HD_dimer 4.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1481g00002 - - jre:108985975 338.576