Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi147g00005 ATGAACTCCTCCTCGTCGTCGTCGTCGTCGTCGTCCAAGGGAAAGAAGAAGCAAACGGCGGCAACAGTACCAACTACGAAAACGACACAAGAGCAGCATCAAACGGCATGGAACGGGAGGTACCTTGGTGTGAGGAGGAGACCATGGGGGAGATACGCGGCAGAGATTAGAGACCCTTCAACCAAAGAGAGACACTGGCTTGGAACCTTCGACACCGCCGAGGAAGCAGCACTTGCATACGACGCCGCAGCACGATCCATGCGCGGCTCACGTGCCCGAACAAACTTCGTATACCCCGACACTCCTCCTGGTTCCTCAGTCACCCCAATCCTTTCCCCAAACCACAATGTTCACGACACATTCGTGACAAACGTGGGACTTTATCACTCACACTCGAATTTTCAACACATTGTCCTTCCCCAACAACCCGACCCGATTCCAACGATGGACCCTGTTTCCCTCCTGGGAATGCCTTATACCTACGGTGGTTATGGTCAAGAGAATAATTATCATAATCAGGGTGGTGCCAACGTGGAGGGTTCCTATTTGAACCAAATGTTTTTTGACGATAGCACTAGCACTAGCACTAGCATTATTAGCACTAACACGATAGAGCTTCCACCTTTGCCACCGGATATTACAAGCTCCACCGGTTATGAGATGGTAGAGGATCAAGGGTATTATTGGGAGCAGAATTTGGGTGATTACATGCATATACCCACGGTGTCAGAGAATGTGCCACGCCCTGAAGGTTTTGATATGGGAAGCTCCTCCTTTTTCTACTGA 786 0.5013 MNSSSSSSSSSSKGKKKQTAATVPTTKTTQEQHQTAWNGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDAAARSMRGSRARTNFVYPDTPPGSSVTPILSPNHNVHDTFVTNVGLYHSHSNFQHIVLPQQPDPIPTMDPVSLLGMPYTYGGYGQENNYHNQGGANVEGSYLNQMFFDDSTSTSTSIISTNTIELPPLPPDITSSTGYEMVEDQGYYWEQNLGDYMHIPTVSENVPRPEGFDMGSSSFFY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi147g00005 261 MobiDBLite consensus disorder prediction 1 37 - -
Gabi147g00005 261 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Gabi147g00005 261 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Gabi147g00005 261 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Gabi147g00005 261 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Gabi147g00005 261 FunFam Ethylene-responsive transcription factor 2 40 98 - -
Gabi147g00005 261 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Gabi147g00005 261 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
Gabi147g00005 261 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 128 - -
Gabi147g00005 261 MobiDBLite consensus disorder prediction 1 39 - -
Gabi147g00005 261 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Gabi147g00005 261 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi147g00005 Gabi-Chr147 60589 61374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi147g00005 9 259 AP2-EREBP Transcription Factor Family AT5G13910 38.931 2.79e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi147g00005 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi147g00005 K09286 - gmx:100809600 210.69