Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1479g00017 ATGGCTGAAAAAACAGATGCACAAGAAGAAGCACGCAAGCCCAAAGTCGTGGAAAAAGTCCCATTTTACAAGCTTTTCTCTTTTGCAGATCGTCTTGATGTGACTTTGATGATCATTGGCACGATCTGTGCCGTGGCTAATGGGTTTTCTCAGCCTCTCATGACTCTCATTTTTGGGAAGCTTATCAACACCTTTGGCACCACCGATCCATCACACATTGTAAAGGAAGTTGCTAAGGTTTCATTATTATTTGTTTACCTGGCTATTGGCTCTGGAATAGCCTCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATCCGTGGCTTGTACTTGAAAACTATATTAAAGCAGGACATTGCCTACTTTGACACTGAAACAACAACTGGTGAGGTCATTGGAAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTCTACAGCTTGTTTCCGCCTTTGTTGGTGGCTTCGTGATTGCCTTTACAAAAGGATGGGAACTATGTCTAGTTTTGCTTGCATGTATTCCTGCAATTGTTATTGTTGGTGGAGTTATGGCCATGATGATGGCGAAAATGTCAAGCCGTGGACAAACTGCTTATGCAGAAGCCGGAAATGTTGTAGAACAAACAACTTCAGCCATTAGAACAGTTGCTTCTTTTACTGGTGAGAAAAAAGCAATAGATAGTTATCAAAACAAGTTGAGAATTGCTTATACCACAACGGTTAAACAAGGGTTGACCTCAGGGTTAGGAATGGGAGTACTTTTGCTGATTGTCTTTAGCACCTATGCACTTGCCATGTGGTATGGTGCCAAAATGATCATTGAGAAAGGATACAATGGTGGAAACGTCTTCAATATAATCATTTCAATTAATACTGGCGGAATGTCACTCGGTCAGACAACCCCATGCCTGAATGCATTTGCATCAGGCCAAGCAGCAGCATATAAGATGTTAGAGACAATTAAAAGAAAACCAGAGATTGATGCTTATGACACCAGTGGTGTTGTCTTGGAAGACTTGAAGGGAGATATTGAACTCAAGGATGTTTGCTTCAGATACCCTGCTAGGCCAGATGTGCAGATCTTTGCTGGATTCTCATTCTATATTCCAAATGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGCAGTGGGAAGTCAACTATAATCAGTTTATTGGAAAGATTCTATGATCCTGATTCTGGAGAAGTACTTATAGATGGTGTGAACTTGAAAAAATTTCAAGTTAGATGGATAAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTGTCCTGTTTACAGCCAGTATCAAAGAGAACATAGCATATGGTAAAGAAGGTGCAACAGATGAGGAGATAACAACAGCAATAACGCTTGCCAATGCCAAAAAGTTCATTGATAAACTGCCTCATGGCCTTGACACTATGGTAGGAGGGCATGGGACTCAACTTTCTGGTGGCCAAAAGCAAAGAATTGCTATTGCAAGGGCAATTTTGAAGAATCCAAGAATCCTCCTTCTTGATGAAGCAACTAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTAGATAAAGTTATGTCAAACAGGACTACTGTAATTGTTGCTCATCGTTTGACAACTATTAGAAATGCTGACACCATAGCTGTGGTTCATCAAGGGAAAATTGTGGAAAAAGGAGCTCATGATGAGTTAATAAAGGATCGTGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGCTAAGGAAGCAGAAGGAAGCCGTAATTCTAATGCAGATAAGAAAACATCAATGAACAGATCAATGAGCCGAGGTTCATCAGGCAGTAGACAATCTCTGTCACTACTTGCCTTTTCTCTTCCTCATCAAATTCCTGTAAATGAGTCTGGAAAAGAAGATGCCAATGATCTTGAAAGTAGTGAAGTTGATAATGTGAAACGCCAAAATGTTTCTATTAAACGTTTGGCACAGTTGAATAAGCCTGAGGTTCCTGTCTTAATACTTGGATCCATTGCTGCAGCAGTTCATGGTGTTGTTCTCCCTGTATTTGGCCTCTTGCTTTCATCAGTTATCAATACGTTCTATAAACCTCCAGATAAGCTTAAGAAAGAATCTGAGTTTTGGGCACTTCTATTTCTTGGTTTGGGTTTTATTACTCTGGTGGCTATACCAGTGCAGAACTACTTCTTTGGGATTGCTGGTGGAAAACTTATAGAAAGAATTCGTTCAATGACATTTCAAAAGGTTGTGCACCAAGAAATCAGCTGGTTCGATCATCCTGAAAATTCAAGTGGTGCGGTTAGTTCAAGGTTAGCTACTGATGCTTCAACAGTGAGAACTCTTGTTGGTGACACCTTGGCCCTCATTGTACAAAACATAGCAACAGTCACAGCAGGTGTAGTTATGGCATTCTCAGCTAATTGGATTCTCGCTTTGGTAATTCTGGCTGTGTCACCCTTGTTGCTCATGCAAGGATACCTTCAGACCAAGTTTCTAAAAGGATTCAGTGCCGATGCAAAGTCGAAGTATGAAGAGGCAAGTCAGGTGGCTAATGATGCTGTTGGCAGCATTAGAACCGTTGCATCATTTTGTGCTGAACCAAAGGTGATGAATATGTACCAGCAGAAATGTTTAGGGCCAGAAAAACAAGGTGTTAGGTTGGGGGTTGTCAGTGGTATAGGATTAGGTTTCTCTTTCTTTGCTCTGTACTGCACAAATGCTTTCTGTTTCTACATAGGAGCAATTCTTGTGCAACACGGGAGAGCAACTTTCGGAGAGGTTTTCAAGGTTTTCTTTGCTTTAACAATAACAGCTGTTGGTGTTTCCCAATCTAGTGCCTTGGCACCAGATACTAACAAGGCCAAAGATTCTGCAGCTTCAATATTCCAAATTCTCGACAGCAAACCTAGTATTGACTCGAGCAGCGATGAAGGCTTGACACTAGAAACCATGAAAGGTGAAATTGAACTTGAAAAGGTCAACTTTAAGTACCCAACAAGGCGTAATATTCAAATTTTCGAAGACATGTGTCTAAGCATCCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATCAGCCTCTTGGAGAGATTTTATGACCCTGATTCTGGACGTGTATTTATAGATGGAGTGGATATCAGAAAGTTCAAACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGGTGCTACCGAGGATGACATAACTACAGCAGCACAAGCAGCCAATGCACACAAGTTCATAAGTTCTCTACCAAATGGTTATGACACCCCAGTTGGAGAAAGAGGCACACAATTATCAGGAGGACAAAAGCAACGTATTGCCATTGCAAGAGCCATGCTCAAAAACCCCAAAATCCTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCAGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGACAGAGTGAGTAAGAACAGAACTACCATTGTGGTAGCTCACCGTCTTGCAACAATTAAAAATGCTGACATCATAGCAGTGGTGAAAAATGGATCCATTGCTGAGAAGGGAAGACATGATGAGTTGATGAAGCTTGATGGTGGAAATTATGCTTCATTGGTAGCACTCCATATGAGTGCAACATAG 3753 0.4157 MAEKTDAQEEARKPKVVEKVPFYKLFSFADRLDVTLMIIGTICAVANGFSQPLMTLIFGKLINTFGTTDPSHIVKEVAKVSLLFVYLAIGSGIASFLQVSCWMVTGERQAARIRGLYLKTILKQDIAYFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFLQLVSAFVGGFVIAFTKGWELCLVLLACIPAIVIVGGVMAMMMAKMSSRGQTAYAEAGNVVEQTTSAIRTVASFTGEKKAIDSYQNKLRIAYTTTVKQGLTSGLGMGVLLLIVFSTYALAMWYGAKMIIEKGYNGGNVFNIIISINTGGMSLGQTTPCLNAFASGQAAAYKMLETIKRKPEIDAYDTSGVVLEDLKGDIELKDVCFRYPARPDVQIFAGFSFYIPNGTTAALVGQSGSGKSTIISLLERFYDPDSGEVLIDGVNLKKFQVRWIREQIGLVGQEPVLFTASIKENIAYGKEGATDEEITTAITLANAKKFIDKLPHGLDTMVGGHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALDKVMSNRTTVIVAHRLTTIRNADTIAVVHQGKIVEKGAHDELIKDRDGAYSQLIRLQEGAKEAEGSRNSNADKKTSMNRSMSRGSSGSRQSLSLLAFSLPHQIPVNESGKEDANDLESSEVDNVKRQNVSIKRLAQLNKPEVPVLILGSIAAAVHGVVLPVFGLLLSSVINTFYKPPDKLKKESEFWALLFLGLGFITLVAIPVQNYFFGIAGGKLIERIRSMTFQKVVHQEISWFDHPENSSGAVSSRLATDASTVRTLVGDTLALIVQNIATVTAGVVMAFSANWILALVILAVSPLLLMQGYLQTKFLKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEPKVMNMYQQKCLGPEKQGVRLGVVSGIGLGFSFFALYCTNAFCFYIGAILVQHGRATFGEVFKVFFALTITAVGVSQSSALAPDTNKAKDSAASIFQILDSKPSIDSSSDEGLTLETMKGEIELEKVNFKYPTRRNIQIFEDMCLSIPAGKTVALVGESGSGKSTVISLLERFYDPDSGRVFIDGVDIRKFKLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDDITTAAQAANAHKFISSLPNGYDTPVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDRVSKNRTTIVVAHRLATIKNADIIAVVKNGSIAEKGRHDELMKLDGGNYASLVALHMSAT 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1479g00017 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1244 IPR027417 -
Gabi1479g00017 1250 Gene3D ABC transporter type 1, transmembrane domain 93 975 IPR036640 GO:0005524|GO:0016020
Gabi1479g00017 1250 PANTHER ABC TRANSPORTER B FAMILY 3 601 IPR039421 -
Gabi1479g00017 1250 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Gabi1479g00017 1250 Gene3D - 997 1249 IPR027417 -
Gabi1479g00017 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 332 - -
Gabi1479g00017 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1244 IPR003439 GO:0005524
Gabi1479g00017 1250 FunFam ABC transporter B family member 9 24 354 - -
Gabi1479g00017 1250 Gene3D - 357 610 IPR027417 -
Gabi1479g00017 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Gabi1479g00017 1250 Pfam ABC transporter 1026 1175 IPR003439 GO:0005524
Gabi1479g00017 1250 SUPERFAMILY ABC transporter transmembrane region 19 343 IPR036640 GO:0005524|GO:0016020
Gabi1479g00017 1250 SUPERFAMILY ABC transporter transmembrane region 672 991 IPR036640 GO:0005524|GO:0016020
Gabi1479g00017 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 990 - -
Gabi1479g00017 1250 FunFam ABC transporter B family member 1 665 973 - -
Gabi1479g00017 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 597 IPR027417 -
Gabi1479g00017 1250 SMART AAA_5 1034 1221 IPR003593 GO:0016887
Gabi1479g00017 1250 SMART AAA_5 386 572 IPR003593 GO:0016887
Gabi1479g00017 1250 MobiDBLite consensus disorder prediction 597 629 - -
Gabi1479g00017 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1479g00017 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Gabi1479g00017 1250 CDD ABC_MTABC3_MDL1_MDL2 1007 1243 - -
Gabi1479g00017 1250 MobiDBLite consensus disorder prediction 610 629 - -
Gabi1479g00017 1250 Pfam ABC transporter transmembrane region 685 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1479g00017 1250 Pfam ABC transporter transmembrane region 37 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1479g00017 1250 Pfam ABC transporter 380 526 IPR003439 GO:0005524
Gabi1479g00017 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1479g00017 1250 FunFam ABC transporter B family member 1 997 1247 - -
Gabi1479g00017 1250 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Gabi1479g00017 1250 FunFam ABC transporter B family member 1 349 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1479g00017 Gabi-Chr1479 158559 164360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1479g00017 9 1246 Calmodulin-binding Proteins AT2G36910 44.674 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1479g00017 K05658 - gmx:100792531 2008.42