Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1479g00001 ATGGCGAGTCGGTTCGGTTCTTCGTCCTCCGGTTCGACCTCGATGGTCGTGACTAACACGCCCTCGCAGGACCTCGCTCTCACCAACTTCGCCTACTGCTCCCCCTCCGATCTTCCTAAATTCGCCGTCCCTGGTTATAACAACCTCTACCTCGCTTCCGTCGCCGATTCCTTCGTTTTCTCGATCTCTGCTCATGAAGGCATACGCAATGGTTATATTGGTTTGAATTCCATTCAGCGTCGGTGTGCCAAAGTTTCTGCTGCTGATTCCACACCTGTGACCCGGTTCGTACCACCTGAGAACTTCGAGCTGGCACTGCTAACTCTTGAATTGGACTTCATTAAAAGGGTTGGAGGCAGGACTGAACAGGTTGATGCTGTTATACTGGCTAAGCAACTTCGGAAGAGATTTATGAACCAGGTTATGACAACAGGGCAGAAAGTGTTATTTGAGTTTCATGGAAATAATTATAGCTTTACAGTCAGTCAAGCTGCTATTGAGGGCCAAGAAAAGTCTAATTCTCTTGAAAGAGGGATGATTTCAGACGATACATATATTGTTTTTGAAGCATCACGTGATAGTGGAATTAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAACCTTCAGTCTTTGGGAATTGGTGGCCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTCATGGGCCTCCTGGAACTGGAAAGACCCTTATTGCACGTCAAATTGGAAAAGTTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACCGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGATGAAAGGGCCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGTACCGGAGTTCATGATAGTATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCTTTGAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCTGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCAGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACCAGCAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTTCAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATTTGCTTTAAACAGACAATTGAGCCTTGATGATCTCACTAAGCCAGTGGAGGAAGATAATATTAAGGTTACTATGGATGACTTTTTGAATGCACTCCATGATGTTATTCCTATGTTTGGAGCTTCCACTGACGACCTTGAAAGAAGAAGACTCCATGGCATGGTGGAATGTGGTGATCGACATAAGCACCTTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTGAAGGAAGCCCACTATTTACTTGTCTTCTGGAAGGTGCTGGTGGCAGTGGTAAAACAGCACTTGCAGCTACTATTGGTATTGACAGCGACTTCCCTTATGTCAAGATAGTTTCATCTGAATCAATGCTTGGTGTTCATGAGAGCACTAAATGTGCAAATATTATTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGTGTCATTATTCTTGATGACATTGAGAGGTTATTGGAGTATGCGCCTATTGGTCCTCGGTTTTCAAACTTGATTTCGCAGACACTACTGGTCTTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGATTATTGGTACCACGAGTGAACTGGGTTTCTTGGACTCAATTCGGTTTTGTGATACTTTCTCTGGTTCTTACCATGTTCCTAACTTAAACACAAATGATGCAAAGAAGGTCCTAGAACAGTTGAATGTCTTTGCCGATGAAGATATTGATTCTGCTGCAGAGGCGTTGAATGATATGCCTATCAAGAAGCTATTCATGTTAATTGAGATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCAGAAGCTATCTTTTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTCAGATTGTAA 2238 0.4281 MASRFGSSSSGSTSMVVTNTPSQDLALTNFAYCSPSDLPKFAVPGYNNLYLASVADSFVFSISAHEGIRNGYIGLNSIQRRCAKVSAADSTPVTRFVPPENFELALLTLELDFIKRVGGRTEQVDAVILAKQLRKRFMNQVMTTGQKVLFEFHGNNYSFTVSQAAIEGQEKSNSLERGMISDDTYIVFEASRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLHGPPGTGKTLIARQIGKVLNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDERARGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTSKMKENSFLAPDVNLQELAARTKNFSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEDNIKVTMDDFLNALHDVIPMFGASTDDLERRRLHGMVECGDRHKHLYQRAMLLVEQVKVSEGSPLFTCLLEGAGGSGKTALAATIGIDSDFPYVKIVSSESMLGVHESTKCANIIKVFEDAYKSPLSVIILDDIERLLEYAPIGPRFSNLISQTLLVLLKRLPPKGKKLMIIGTTSELGFLDSIRFCDTFSGSYHVPNLNTNDAKKVLEQLNVFADEDIDSAAEALNDMPIKKLFMLIEMAAQGEQGGSAEAIFSGKEKINISHFYDCLQDVVRL 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1479g00001 745 SUPERFAMILY ADC-like 12 96 IPR009010 -
Gabi1479g00001 745 Gene3D - 100 198 - -
Gabi1479g00001 745 SUPERFAMILY Cdc48 domain 2-like 99 203 IPR029067 -
Gabi1479g00001 745 SMART AAA_5 254 401 IPR003593 GO:0016887
Gabi1479g00001 745 SMART AAA_5 534 672 IPR003593 GO:0016887
Gabi1479g00001 745 CDD RecA-like_NSF-SEC18_r1-like 221 397 - -
Gabi1479g00001 745 Gene3D - 400 487 - -
Gabi1479g00001 745 PANTHER VESICULAR-FUSION PROTEIN NSF 13 744 IPR039812 GO:0016887|GO:0035494
Gabi1479g00001 745 FunFam Vesicular-fusion ATPase SEC18 210 400 - -
Gabi1479g00001 745 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Gabi1479g00001 745 Gene3D - 496 667 IPR027417 -
Gabi1479g00001 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 497 IPR027417 -
Gabi1479g00001 745 FunFam vesicle-fusing ATPase isoform X1 496 667 - -
Gabi1479g00001 745 Pfam AAA+ lid domain 425 480 IPR041569 -
Gabi1479g00001 745 FunFam Vesicle-fusing ATPase 400 487 - -
Gabi1479g00001 745 Pfam Cell division protein 48 (CDC48), domain 2 124 165 IPR004201 -
Gabi1479g00001 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 709 IPR027417 -
Gabi1479g00001 745 FunFam Vesicle-fusing ATPase 100 198 - -
Gabi1479g00001 745 Pfam ATPase family associated with various cellular activities (AAA) 258 398 IPR003959 GO:0005524|GO:0016887
Gabi1479g00001 745 Pfam ATPase family associated with various cellular activities (AAA) 539 652 IPR003959 GO:0005524|GO:0016887
Gabi1479g00001 745 Gene3D - 10 96 - -
Gabi1479g00001 745 FunFam Vesicle-fusing ATPase protein 12 96 - -
Gabi1479g00001 745 Gene3D - 207 399 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1479g00001 Gabi-Chr1479 5334 28748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1479g00001 159 473 Calmodulin-binding Proteins AT3G56690 30.599 3.22e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1479g00001 K06027 - gmx:100779259 1280