Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1476g00015 ATGAAGTTGCAGTTCTTTAGTATTGCACTTGTTCTGTTAAGCTCCACCCTCTCTCTCTTTGGCTTGATAGTTGCTGACTTGAACTCTGACAAACAAGCTCTCTTGGAGTTTGCTTCTACTGTTCCACATGCCCCAAGGCTCAACTGGAATGACTCTACTTCAATTTGTACCTCATGGGTTGGTGTAACTTGCAACTCTAATGGAACTCGTGTCATAGGCATCCATCTTCCAGGAATTGGATTAACTGGGTCCATTCCAGAGAACACCATAGGAAAACTTGATGCTCTTAGGGTCCTGAGTCTTCATTCCAATGGCCTTAGAGGAAATCTTCCTTCTAACATCCTTTCCATTCCTTCACTCCAATTTGCACACCTTCAGCATAACTACTTTTCAGGTGTAATTCCTTCCACTGTCTCCCCTAAACTCATTGCATTGGATATTTCCTTTAACTCCTTCTCTGGCAGTATCCCTCCTGTATTTCAGAACCTAAGAAGACTCACCTGGTTGTATCTCCAAAATAATTCCATATCTGGAGCTATTCCTGACTTCAACCTTCCAGCACTCAAATATTTGAATTTGAGCTATAATAACTTGAATGGCTCAATTCCAAATTCCATCAAAACATTCCCTTATACTTCTTTTGTTGGGAACTCTCTCTTATGTGGGCCACCTCTAAATCATTGTTCTACAATCTCCCCTTCTCCATCTCCTTCTCCTGTTTACCAGCAATTCTCTCCAGCAACTACCCAAAACCAAAAAGCTACCACCCATAAGAAAACCTTTGGCCTAGCTACTATTCTTGCTCTAGTCATTGGAGGCATTGCATTCCTCTCTCTACTAGTTTTAGTGATCTTTGTATGCTGTTTGAAGAGGAAAAACAGCAAAAGCAGTGGCATACTGAAAGGGAAGGCGTCTTGTGCTGGAAAGACTGAGGTCTCAAAGAGTTTTGGTAGTGGGGTGCAAACGGCTGAAAAGAACAAGTTATTTTTCTTTGAAGGTAGCTCTTGTAGCTTTGACCTTGAGGATTTGCTAAAGGCTTCAGCTGAAGTTCTTGGAAAAGGGAGCTATGGAACAGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTTAAAAGATTGAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAGCATATGGAATTTGTAGGGAGACTTGGAAGTCACCCCAATGTCATGCCCCTTCGAGCTTATTACTTTTCCAAAGATGAGAAACTTCTAGTTTACAACTACATGCCAGGAGGCAGCTTGTTTTACTTGTTGCATGAAAACCGTGGTGCAGGAAGAACTCCGTTAGATTGGGATTCAAGAGTGAAGATTTCACTTGGAGCTGCAAAGGGAATTGCTTTCATTCACTCCGAGGGGGGTCCAAAATTTCCACATGGAAACATAAAGTCAACCAATGTGCTCATAACTCAAGAACTTGATAGCTGCATCTCTGATGTTGGATTGCCTCCTTTGATGAATACCTCAGCAACCATGTCCAGACTCAATGGCTATAGAGCTCCAGAAGTTACTGATTCCAGAAAGATCACACAGAAATCTGATGTTTACAGCTTTGGTGTGCTTCTACTTGAAATGCTAACAGCCAAGACCCCAATGAGATATCCAGGGTTTGATGAAGCTGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTTAGAGAAGAATGGACAGCTGAAGTCTTTGATGAGGAGCTTCTGAGAGGCCAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGCTTGTGTAGCTAAGGTGCCAGATACAAGGCCTAGAATGGATGAAGTTGCTAGAATGATAGAGGAAATTAAACACCCTGAGTTGAAGAACAGGCCATCCTCTGAGTCTGAGTCTAATGTGCAGACACCATAA 1911 0.4265 MKLQFFSIALVLLSSTLSLFGLIVADLNSDKQALLEFASTVPHAPRLNWNDSTSICTSWVGVTCNSNGTRVIGIHLPGIGLTGSIPENTIGKLDALRVLSLHSNGLRGNLPSNILSIPSLQFAHLQHNYFSGVIPSTVSPKLIALDISFNSFSGSIPPVFQNLRRLTWLYLQNNSISGAIPDFNLPALKYLNLSYNNLNGSIPNSIKTFPYTSFVGNSLLCGPPLNHCSTISPSPSPSPVYQQFSPATTQNQKATTHKKTFGLATILALVIGGIAFLSLLVLVIFVCCLKRKNSKSSGILKGKASCAGKTEVSKSFGSGVQTAEKNKLFFFEGSSCSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQHMEFVGRLGSHPNVMPLRAYYFSKDEKLLVYNYMPGGSLFYLLHENRGAGRTPLDWDSRVKISLGAAKGIAFIHSEGGPKFPHGNIKSTNVLITQELDSCISDVGLPPLMNTSATMSRLNGYRAPEVTDSRKITQKSDVYSFGVLLLEMLTAKTPMRYPGFDEAVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKVPDTRPRMDEVARMIEEIKHPELKNRPSSESESNVQTP 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1476g00015 636 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Gabi1476g00015 636 Gene3D Transferase(Phosphotransferase) domain 1 421 634 - -
Gabi1476g00015 636 Pfam Leucine rich repeat 124 176 IPR001611 GO:0005515
Gabi1476g00015 636 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 421 627 - -
Gabi1476g00015 636 FunFam Probable inactive receptor kinase RLK902 27 182 - -
Gabi1476g00015 636 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1476g00015 636 MobiDBLite consensus disorder prediction 616 636 - -
Gabi1476g00015 636 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Gabi1476g00015 636 ProSitePatterns Protein kinases ATP-binding region signature. 351 382 IPR017441 GO:0005524
Gabi1476g00015 636 SUPERFAMILY Protein kinase-like (PK-like) 349 616 IPR011009 -
Gabi1476g00015 636 Gene3D Phosphorylase Kinase; domain 1 310 420 - -
Gabi1476g00015 636 Pfam Leucine Rich Repeat 188 208 IPR001611 GO:0005515
Gabi1476g00015 636 CDD STKc_IRAK 351 616 - -
Gabi1476g00015 636 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Gabi1476g00015 636 Pfam Protein tyrosine and serine/threonine kinase 349 611 IPR001245 GO:0004672|GO:0006468
Gabi1476g00015 636 FunFam pollen receptor-like kinase 1 313 420 - -
Gabi1476g00015 636 SUPERFAMILY L domain-like 38 226 - -
Gabi1476g00015 636 PANTHER OS05G0588300 PROTEIN 9 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1476g00015 Gabi-Chr1476 224273 227460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1476g00015 5 634 Receptor kinase-like Gene Family AT5G58300 59.561 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi1476g00015 PK_Tyr_Ser-Thr 2.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1476g00015 - - aprc:113868460 1098.96