Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1476g00009 ATGGAGAAGGAGTTGGTTGAATTGTACGAAGCCGCGAAGAAGGCGGCGGATTCGTCCACCAACACCGACGGCGAACACGAAGAAAGCCGATGTATTGATGCGCTCGAGCAGCTCAAGAAATTCCCCGTCAATTATAAGATTCTCGTCAACACCCAGGTGGGCAAACATCTTAAAGTTCTCACTAAGCACCCAAGGCAGAAAATTCGGGCCTTTTCCACTGACCTCATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAGAATGGGGGCTCTGATAATAAGGGTGAGACAGAAAATGGGGAGAGAGCTAAACCTGGGAAAATTCAAAAGAGTCCATCTTTGAAGGTTGAGAAAGGTGAAACTGTTAAGGTTGAGAAAATTGATAAGAATGGTACACCAAGGTCAAGCTCAGAAAATATAAAGAAGGTGCAAAATGGGGATGTCAAAATTGAGAAAACTGATCATGTCGCAAGCGTCAAGGTGGAAAAGATAGCCAAAGAGGAAAAGCCATTTTCTGGAGCAAAGAAAATGTCTTCCACCTCTGCCAATCCTCCGAAGCTAAAGAGTATGATTAAATCTAATGACGCAACACGAGACAAAATAAGGGAAATTCTCCAGGAAGCTTTATCCAGGGTTTCTGGAGAGGCTGATGAAGATATCATGGATGAAGTTAATGCGTGCGACCCTATTCGTGTTGCTGTGAAAGTGGAGTCTGTACTATTTGAAAAGTGGGGTCCTTCGAATGGGGCTCAAAAGGTTAAGTACAGGTCCTTAATGTTTAACCTTAAGGATCAAAACAACCCTGATTTCCGGAGAAAAGTTTTACTTGGGGTTGTTGAGCCAGAGCGGCTGATCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAGGTCGAGAAAATCAAAGAGAAAGCTTTATTTGACTGTGAGCGTGGAGCTCAACCAAAAGCCACAACTGATCAATTTAAGTGTGGTCGATGTGGGCAAAGGAAGTGCACCTATTATCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTGTTTGCAATAACCGTTGGAAGTTCTGTTAG 1110 0.4333 MEKELVELYEAAKKAADSSTNTDGEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQKIRAFSTDLIEIWKGIIIKETSKNKNGGSDNKGETENGERAKPGKIQKSPSLKVEKGETVKVEKIDKNGTPRSSSENIKKVQNGDVKIEKTDHVASVKVEKIAKEEKPFSGAKKMSSTSANPPKLKSMIKSNDATRDKIREILQEALSRVSGEADEDIMDEVNACDPIRVAVKVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGVVEPERLINMSTAEMASEQRKQEVEKIKEKALFDCERGAQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1476g00009 369 SMART Cys4_2 329 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gabi1476g00009 369 Gene3D - 178 297 IPR036575 GO:0006351
Gabi1476g00009 369 MobiDBLite consensus disorder prediction 178 194 - -
Gabi1476g00009 369 ProSiteProfiles TFIIS central domain profile. 201 324 IPR003618 GO:0006351
Gabi1476g00009 369 CDD Zn-ribbon_TFIIS 322 368 - -
Gabi1476g00009 369 PIRSF TFIIS 2 369 IPR035100 -
Gabi1476g00009 369 NCBIfam transcription elongation factor S-II 12 369 IPR006289 GO:0003676|GO:0005634|GO:0006368
Gabi1476g00009 369 SMART TFS2_5 8 85 IPR003617 GO:0005634
Gabi1476g00009 369 SMART mid_6 203 307 IPR003618 GO:0006351
Gabi1476g00009 369 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Gabi1476g00009 369 ProSiteProfiles Zinc finger TFIIS-type profile. 327 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gabi1476g00009 369 CDD TFIIS_I 9 83 - -
Gabi1476g00009 369 MobiDBLite consensus disorder prediction 91 109 - -
Gabi1476g00009 369 SUPERFAMILY Elongation factor TFIIS domain 2 189 299 IPR036575 GO:0006351
Gabi1476g00009 369 Pfam Transcription factor S-II (TFIIS) 329 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gabi1476g00009 369 ProSitePatterns Zinc finger TFIIS-type signature. 331 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gabi1476g00009 369 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Gabi1476g00009 369 Pfam Transcription factor S-II (TFIIS), central domain 198 315 IPR003618 GO:0006351
Gabi1476g00009 369 MobiDBLite consensus disorder prediction 174 194 - -
Gabi1476g00009 369 MobiDBLite consensus disorder prediction 88 144 - -
Gabi1476g00009 369 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 369 - -
Gabi1476g00009 369 FunFam Probable Transcription elongation factor S-II 298 369 - -
Gabi1476g00009 369 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Gabi1476g00009 369 Gene3D - 298 369 - -
Gabi1476g00009 369 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 98 IPR035441 -
Gabi1476g00009 369 SUPERFAMILY Zinc beta-ribbon 307 367 - -
Gabi1476g00009 369 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1476g00009 Gabi-Chr1476 152960 159796 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi1476g00009 TFIIS_M 7.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1476g00009 K03145 - gmx:100811982 631.328