Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1472g00021 ATGGACTTTGCAGTAACAACGTCTACAGATGCAACGACAGTACTGAGGATGTTGAGAGAAAACAAGTTTGACATTGTAATCAGTGAACTTTACATGCCTGAAATTGAAGGACTTAAGCTGCTTAAGCTCATGCAACCTATGGACATACCTGTTATATTGTGCTCCAATGATTGTGACAGAAAGTTGGCGATGGAAGCAGTTAATCTGGGAGCATGTGATTATTTGCAGAAACCAATTATAATTGAAGAGCTGCAGAATATTTGGCAGCATGTATTCAGAAAGAAGATTAATTCTAAGAAGCAGGAAGAAAAGATAAATTCTAAGAAGCAGGAAGAAAATGAGAATAACGACTATAAAGAGCCTGGTCATAACATGGAGCACCCTTCAACACAAAAGAAGCATCGGGTTATTTGGACGGAGGAGCTGCACCAGAGTTTTTTGGCCGCTGTTAATCAGTTAGGAGGTGTTGACAAGGCTGTAACTAAACAAGTTCTTCAAGTGATGAACGTTGAGGAGCTTACTAGGGCGAATGTGGCCAGCCATCTTCAGTATTATAGACGAAGTCTGAACAAAATCAGCTCTAAGCCAACTCAACAAGTTAATAACGTCAGTGCTTTTAGATCTTCTTCACCTGGTGGGATGATTAGAAGATTGGACACTCGTGCTGCTCTGTATGTGCCAGAGTTGCCTTATTCTGCAAATCTTCAATTGGATCTTGCACAGAACTTAAACAACTCAACCAATGATCAACGTAATTTATAG 762 0.4003 MDFAVTTSTDATTVLRMLRENKFDIVISELYMPEIEGLKLLKLMQPMDIPVILCSNDCDRKLAMEAVNLGACDYLQKPIIIEELQNIWQHVFRKKINSKKQEEKINSKKQEENENNDYKEPGHNMEHPSTQKKHRVIWTEELHQSFLAAVNQLGGVDKAVTKQVLQVMNVEELTRANVASHLQYYRRSLNKISSKPTQQVNNVSAFRSSSPGGMIRRLDTRAALYVPELPYSANLQLDLAQNLNNSTNDQRNL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1472g00021 253 MobiDBLite consensus disorder prediction 99 131 - -
Gabi1472g00021 253 Coils Coil 93 113 - -
Gabi1472g00021 253 ProSiteProfiles Response regulatory domain profile. 1 92 IPR001789 GO:0000160
Gabi1472g00021 253 SUPERFAMILY CheY-like 2 102 IPR011006 -
Gabi1472g00021 253 FunFam Two-component response regulator 129 193 - -
Gabi1472g00021 253 SUPERFAMILY Homeodomain-like 130 191 IPR009057 -
Gabi1472g00021 253 Gene3D - 1 125 - -
Gabi1472g00021 253 Pfam Response regulator receiver domain 3 86 IPR001789 GO:0000160
Gabi1472g00021 253 Gene3D - 129 193 - -
Gabi1472g00021 253 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 187 IPR006447 GO:0003677
Gabi1472g00021 253 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 202 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1472g00021 Gabi-Chr1472 225447 227134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1472g00021 3 204 Response Regulator Gene Family AT4G31920 48.598 1.29e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1472g00021 Response_reg 4.6e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1472g00021 - K14491 tcc:18587723 219.164