Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1472g00004 ATGGTGATTACTTCAGCTGTCACAGACCCAGAAGAACAAGGACAAAGCTTACACTGTACTTTCGCTTCCAGATATATGTGTGAATCTGTTCCCAAGTTCAAGATGCCAGCGAGGTCTATACCAAAGGATGCAGCATATCAGATAATAAATGATGAGTTGATGCTGGATTGTACACCAAGGCTCAACTTGGCTTCCTTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATAATGGCTTCACTTAACAAGAACTATGTTGACATGGATGAGTATCCTGTCACCACTGAGCTTCAGAACCGGTGTGTTAATATAATAGCACATCTATTCAATGCACCTATAGGCGAAGATGAGGTTGCAGTAGGTGTGGGAACTGTGGGATCATCAGAGGCAATAATGTTAGCAGGTCTTGCTTTTAAAAGGAAATGGCAGACAAAGAGAAAAGGAGAAGGCAAACCATATGATAAGCCCAACATAGTTACTGGGTCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAAGTGAAACTCACAGAAGGATACTATGTGATGGACCCTGTGAAAGCAGTTGAAATGGTGGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGGTCTACTATGACAGGAGAATTTGAGGATGTGAAGCTTCTTAATGAACTTCTTACTAAAAAGAATAAGGAGACAGGGTGGAATACTCCAATTCATGTTGATGCTGCCAGTGGGGGTTTTATTGCCCCATTTCTCTACCCTGATCTAGAGTGGGATTTCCGTTTGCCATTGGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGTCTTGTCTACCCTGGTGTTGGTTGGGTTGTGTGGAGGAGTAAAGATGATCTGCCAGATGATCTTGTTTTCCACATAAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGGATCTAGTCAAATTATTGCTCAATATTACCAATTTATACGGCTTGGCTTCGAGGGTTACAAAAACATCATGGAAAATTGCTTGGAGAATGCAAGATTTCTGAAAGAAGGAATTGAGCAAACTGGGCTGTTTAACATTATCTCCAAGGATATAGGTGTGCCACTTGTAGCATTCTCTTTGAAAGACAGTAGTCAACACACAGTGTTTGAGATATCAGACCATCTGAGAAAATATGGGTGGATAGTTCCGGCCTATACAATGCCACCAGATGCTCAACACATCGCGGTGCTCCGGGTGGTGATTCGGGAGGATTTCAGCCGCGGATTGGCTGAGAGACTTCTTTCTGACATAGACAAAGTTATGAAGATCTTGGACACACTTCCAAGCCCTCTATCCACCAAAGCTGCACATGTCACAGCTATCACTAGTGAGACAAGTGAGAAGGTTAAATGGAGTGAAATTGAGATTCAATCAGAGGTTGTCAAGTACTGGAAGCGACTTGTTGATGGAAGGAGAGTTGGTGCATGTTAG 1500 0.428 MVITSAVTDPEEQGQSLHCTFASRYMCESVPKFKMPARSIPKDAAYQIINDELMLDCTPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGEDEVAVGVGTVGSSEAIMLAGLAFKRKWQTKRKGEGKPYDKPNIVTGSNVQVCWEKFARYFEVELKEVKLTEGYYVMDPVKAVEMVDENTICVAAILGSTMTGEFEDVKLLNELLTKKNKETGWNTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCLENARFLKEGIEQTGLFNIISKDIGVPLVAFSLKDSSQHTVFEISDHLRKYGWIVPAYTMPPDAQHIAVLRVVIREDFSRGLAERLLSDIDKVMKILDTLPSPLSTKAAHVTAITSETSEKVKWSEIEIQSEVVKYWKRLVDGRRVGAC 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1472g00004 499 NCBIfam glutamate decarboxylase 20 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gabi1472g00004 499 Gene3D - 1 68 - -
Gabi1472g00004 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gabi1472g00004 499 FunFam Glutamate decarboxylase 7 68 - -
Gabi1472g00004 499 Gene3D - 69 363 IPR015421 GO:0003824
Gabi1472g00004 499 FunFam Glutamate decarboxylase 69 363 - -
Gabi1472g00004 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gabi1472g00004 499 SUPERFAMILY PLP-dependent transferases 19 445 IPR015424 -
Gabi1472g00004 499 FunFam Glutamate decarboxylase 364 451 - -
Gabi1472g00004 499 Gene3D - 364 451 - -
Gabi1472g00004 499 CDD DOPA_deC_like 62 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1472g00004 Gabi-Chr1472 44703 48706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1472g00004 12 499 Calmodulin-binding Proteins AT3G17760 77.869 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1472g00004 K01580 - gmx:100796475 905.205