Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1471g00014 ATGGAGGATCAGGCAGTTTTAGAGGGTGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGATGACGATGAAGTATGCAAAGAAGTTCAGGAGGAAAAATTGAAGGATGAGCTTGATGAATTTTCAGTGAAGTTGTTCTTCAAGGGCTTGTCAATATCCGGGGTTGTAAATTCTGGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGAGCATCAAGTCTTCCTGTTATTCGGGTGCAGAAAAGGCTTGATTTTTATGCAGAGGAACCACTTGTTGACTACTTGGCTCTCATGGATGGTTTGCTGGAAGCTACGAGGAACAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAGTTGTTGTACAATCAGATAACACTTGAGAAAAATCTTGAGATGCCACTTTTGATGGCACTGAGAGAAAGGATACTGGAACTTGCGAGTAATTTTGAAGCCTTTATTCTGAATCATGTTCCAAGTATTGATCTTGAGCAGCCACTGCAATTAGCCAAAGTAGCAATTGGACTTGTCACTTTTCCAGTGAATGGCCAAAGTCTACTTGAGAGTTGTTCTATTTGTTGTGAGGACAAGCCAATGCCAATTATGGTCACCATGAAATGTTTACACAAGTTCTGTTCACATTGCTTGAAGGCCTACGTTGATAGCAAAGTACAATCTTGTCAAGTCCCTATCAGATGTCCTGAACCAGGATGCAAAAATTACATCTCTGCCACCGAGTGCAGGTCTTTCCTACCATTCACTTCCTTTGAATCTTTCGAGAAAGCTCTTGCAGAAGCAAGTTTACTCTATTCAGATAGAATTTACTGTCCATTTCCAAATTGCTCTGTTCTCATTGATCCTCATAAATGTTTATCAGCTAGGGCTAGTTCATCTAGTCAGTCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTAAGGTACCATGGCATTCTTCTATGAGCTGTGAAGAATTTCAGAATCTTCCAGAGGAGGATAGAGATGCTTCTGACATTACTTTGCATCGCCTTGCTCAGAATAATAGGTGGAAGCGCTGTCAGCAATGTCGTAGGATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCATGAGTTTTGTTATTCTTGTGGTGCGGAATACCGGGATGGTCAACAGACATGTCAGTGTGCATTTTGGGATGAAGACAACTCTGAAGACTCAGCATCACACTCTCTCCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTATCCCCATGATCACAGATGCATACTCCGACCAAGAACAATCACAGCTTGCGCTTATTCAAAGGTTTTTAACTGGAGGTTTAGGTTTGAGTGACCATCATTCTTACCAGTCTCCTCCTCCCCGCTGTTCGGACTCCTATGTGGATGCAATCAAGGATCTGCATCAGCTTCCATGGCTCGAGAGTTTTGTGTCTGTGATAAGTGATGACTATGAAGATTATTTTCAATGA 1530 0.4209 MEDQAVLEGVGREEEEDEFCSCCEDDDEVCKEVQEEKLKDELDEFSVKLFFKGLSISGVVNSGSGFSGIGVFMERASSLPVIRVQKRLDFYAEEPLVDYLALMDGLLEATRNKIRRVYAFTDSELLYNQITLEKNLEMPLLMALRERILELASNFEAFILNHVPSIDLEQPLQLAKVAIGLVTFPVNGQSLLESCSICCEDKPMPIMVTMKCLHKFCSHCLKAYVDSKVQSCQVPIRCPEPGCKNYISATECRSFLPFTSFESFEKALAEASLLYSDRIYCPFPNCSVLIDPHKCLSARASSSSQSDNSCVECPVCQRFICVDCKVPWHSSMSCEEFQNLPEEDRDASDITLHRLAQNNRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDEDNSEDSASHSLQESEQWAWETFNSIPMITDAYSDQEQSQLALIQRFLTGGLGLSDHHSYQSPPPRCSDSYVDAIKDLHQLPWLESFVSVISDDYEDYFQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1471g00014 509 Gene3D - 331 456 - -
Gabi1471g00014 509 SMART ibrneu5 262 334 IPR002867 GO:0008270
Gabi1471g00014 509 SMART ibrneu5 344 403 IPR002867 GO:0008270
Gabi1471g00014 509 FunFam RBR-type E3 ubiquitin transferase 332 457 - -
Gabi1471g00014 509 SUPERFAMILY Ribonuclease H-like 59 164 IPR012337 -
Gabi1471g00014 509 SUPERFAMILY RING/U-box 269 339 - -
Gabi1471g00014 509 SUPERFAMILY RING/U-box 348 411 - -
Gabi1471g00014 509 ProSiteProfiles TRIAD supradomain profile. 191 409 IPR044066 -
Gabi1471g00014 509 FunFam RBR-type E3 ubiquitin transferase 47 182 - -
Gabi1471g00014 509 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Gabi1471g00014 509 Pfam IBR domain, a half RING-finger domain 268 334 IPR002867 GO:0008270
Gabi1471g00014 509 Pfam IBR domain, a half RING-finger domain 354 403 IPR002867 GO:0008270
Gabi1471g00014 509 SUPERFAMILY RING/U-box 193 271 - -
Gabi1471g00014 509 ProSiteProfiles Zinc finger RING-type profile. 195 239 IPR001841 -
Gabi1471g00014 509 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 120 455 IPR031127 GO:0004842|GO:0016567
Gabi1471g00014 509 CDD BRcat_RBR_unk 276 337 - -
Gabi1471g00014 509 FunFam RBR-type E3 ubiquitin transferase 190 275 - -
Gabi1471g00014 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 274 IPR013083 -
Gabi1471g00014 509 Pfam Reverse transcriptase-like 58 164 IPR002156 GO:0003676|GO:0004523
Gabi1471g00014 509 Gene3D - 47 181 IPR036397 GO:0003676
Gabi1471g00014 509 CDD Rcat_RBR_unk 360 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1471g00014 Gabi-Chr1471 174301 178748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1471g00014 24 394 C3H Transcription Factor Family AT2G19610 26.276 2.78e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1471g00014 - - gmx:100783040 803.127