Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1471g00011 ATGGAAAGAGGTGGATACAGAAATAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCCGTGAAGGTGGCGGTGGCAGTGGCAGAGGAAGAGGGTTTTATCGGCAACCACAATCTGGTGGTGGCAGTGGCAGAGGCAGAGGATCTTCTTCCCAATCACAACAACAATGGCAGCAAAGGCCGAACCCCTCTTCTTCCTCAACCCAGACTTATAGCGATAGTGGATCATCTTCAAATCCTCCTCAACCCTCCAAATCCAAACATCTTCCCCCTCAAATTCATCAACCAGATATTGGAGTGCTGCAAATATCAGATTCAGAGCAGGCAGTGGGAAAGATTACACCCGTGCACAGGCCTGATAAAGGCGGAACGCTAGCAATTCGATACTGCAATCTGCGAGTGAATCATTTTCCGGTGACCTTCAATCCACAAAGCATAATCATGCACTATAATGTGGATGTGAAGGCGAAGTTGCCGCCGAAAAAGGGTCAGCATCCTAAGAAGATTTTAAAGTCCGAGTTGTCCATGATTAGGGACAAATTGTTCTCTGATCATCCCCAGAGGTTGCCTTCATTGATGACTGCCTATGATGGTGAAAAGAACATCTTCAGTGCGGTGCCTTTGCCCGAGGAAACCTTTTCTGTGGATGTCTCTAAAGGAGAGGATGAAAGGCCCATTTCATATAATGTTACTTTGACACTCGTGAACAAGCTCGAGCTCCGCAAGTTGAAGGATTACCTCAGTAGCAATGTCCTCTCCATTCCTAGGGATATTTTACAGGGGATGGATTTGGTGGTGAAGGAGAACCCAGCTAGGCGCACTATTTCTGTGGGAAGAAGCTTCTATCCCACAAATCCTCCATTGGTAGAGAGGGATCTTCAACATGGAATAATTGCAATAGGAGGGTTTCAACATAGTCTCAAGACTACCTCTCAAGGTTTGTCCTTATGCCTGGACTATTCGGTTTTGTCTTTTCGAAAGAAAATGTCTGTCTTAGATTTCCTGCATGAGCATATTGAGAATTTCAATTTGGCTGAGTTTCGGAAATACAAGAAATATGTGGAGCAGGCACTTATTGGATTGAAAGTAAATGTCACCCATCGGAGAACCAAACAGAAATACACTATTGCCAGGTTAACATCCAAGGATACACAGCATATCGATTTCACTATTGTGGACCCCCAGGGCCAAAATCCCCCGAAGAACATTAGTCTTCTTGCCTACTTTAAAGATAAATATAATGTGAACATTCAATACAAAGATATTCCAGCCTTAGACTTTGGAGGGAATAAGACGAATTATGTACCTATGGAGTTATGCATCTTAGTTGAGGGTCAAAGATACCCTAAAGAGCATTTGGACTATCATGCTTCCAAGACTCTGAAAGGTATGTCATTGCCTCATCCAAGGGAGAGGGAAGCTGTAATACAGACGATGGTGAAGTCCAGCGATGGACCATGCGGCGGTGGTATTCTTCAAAATTTTGGAATGAGTGTCAACACTTCCATGACAAACTTGAAAGGACGTGTCATGGGGCCCCCAGTATTGAAGTTAGGTGATCGAAATGGCAAGATTATTAGTATGACACTGGATCCAGAGAAATGTCAATGGAATCTAGTTGGAAAGTCGATGGTGGAAGGCAAGCCAGTTGAGTGTTGGGGCATTCTTGATTTTACCAGCAATGGCCATAATTGGCGCAAATTAAAAGGCAAGCAATTTGTTCAGAACCTTATTGATAAGTACAGAAAATTGGGGATTTACATGAAGGAGCCTGTTTGGTATGAAAGTTCCGAAATGTGGAAACTTGGGAATTATAATTTACTATGTGAGTTACTTGAAAAAATTAATGATAGGGTTCAAAAAAAATGTCAACGCCGCCTGCAATTTCTTCTTTGTGTGATGGCCGACAAGGATCAAGGTTACAAGTGGCTCAAGTGGATTTCTGAGACCAGGGTTGGCATAGTGACACAATGCTGCTTGTCTGGTAATGCTAATGAGGGTAAAGACCAATATCTTACAAATCTTGCTCTCAAGATCAATGCGAAAATTGGAGGCAGTAATGTGGAGCTCAATAATACGCTCCCACACTTAAAGGGCGAAGGTCATGTCATGTTCATAGGGGCTGATGTCAATCATCCAGGTTCCCAGGACACCAATAGTCCATCAATTGCTGCTGTGGTTGCCACAGTTAATTGGCCTGCTGCAAATCGCTATGCAGCACGTGTTTGTGCTCAAGACCGTCGGACTGAGAAAATTTTGAATTTTGGAGAAGTTTGCCTCGAGCTTGTTGCCTACTATGATAGGTTGAACAAAGTCAGGCCTGAAAAAATTGTTATCTTTCGTGATGGCGTGAGTGAGAGCCAATTTGATATGGTTCTTAGTGAGGAACTACAAGATTTGAAGACGAAATTTCATCGCTCAAATTACTTCCCAACCATCACTCTTATTGTAGCACAAAAACGACATCAGACTCGATTGTTTCCAGCAGGTGCGAGGGAGGGGACTTCTAGTGGCAATGTGTTCCCTGGAACAGTTGTTGACACAAAAGTCGTACACCCTTTTGAATTTGACTTCTACCTTTGTAGTCACTATGGAAGCCTTGGTACAAGCAAGCCCACTCACTATCATGTCTTGTGGGATGAGCACAAATTCACTTCTAATGATTTGCAGAAACTCATATATGATATGTGTTTTACATATGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCGGTGTACTATGCCGACCTTGCTGCTTATAGAGGACGATTATACTATGAAGCAGGGATTGGGGTGCAATCACCAAACTCAGCTGCATCTTCTTCTTCTTCTTCATCGCCTATGGCTTCTTCATCACTTTCTTCAACAACCTCGCAGTCAAATGATCCAGGGTGTTACAAGTTGCATGCTGATGTGGAAAACGCAATGTTCTTCATCTGA 2937 0.4379 MERGGYRNRGGGGGGGGGREGGGGSGRGRGFYRQPQSGGGSGRGRGSSSQSQQQWQQRPNPSSSSTQTYSDSGSSSNPPQPSKSKHLPPQIHQPDIGVLQISDSEQAVGKITPVHRPDKGGTLAIRYCNLRVNHFPVTFNPQSIIMHYNVDVKAKLPPKKGQHPKKILKSELSMIRDKLFSDHPQRLPSLMTAYDGEKNIFSAVPLPEETFSVDVSKGEDERPISYNVTLTLVNKLELRKLKDYLSSNVLSIPRDILQGMDLVVKENPARRTISVGRSFYPTNPPLVERDLQHGIIAIGGFQHSLKTTSQGLSLCLDYSVLSFRKKMSVLDFLHEHIENFNLAEFRKYKKYVEQALIGLKVNVTHRRTKQKYTIARLTSKDTQHIDFTIVDPQGQNPPKNISLLAYFKDKYNVNIQYKDIPALDFGGNKTNYVPMELCILVEGQRYPKEHLDYHASKTLKGMSLPHPREREAVIQTMVKSSDGPCGGGILQNFGMSVNTSMTNLKGRVMGPPVLKLGDRNGKIISMTLDPEKCQWNLVGKSMVEGKPVECWGILDFTSNGHNWRKLKGKQFVQNLIDKYRKLGIYMKEPVWYESSEMWKLGNYNLLCELLEKINDRVQKKCQRRLQFLLCVMADKDQGYKWLKWISETRVGIVTQCCLSGNANEGKDQYLTNLALKINAKIGGSNVELNNTLPHLKGEGHVMFIGADVNHPGSQDTNSPSIAAVVATVNWPAANRYAARVCAQDRRTEKILNFGEVCLELVAYYDRLNKVRPEKIVIFRDGVSESQFDMVLSEELQDLKTKFHRSNYFPTITLIVAQKRHQTRLFPAGAREGTSSGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFTSNDLQKLIYDMCFTYARCTKPVSLVPPVYYADLAAYRGRLYYEAGIGVQSPNSAASSSSSSSPMASSSLSSTTSQSNDPGCYKLHADVENAMFFI 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1471g00011 978 SMART Piwi_a_2 627 926 IPR003165 GO:0003676
Gabi1471g00011 978 Pfam Argonaute linker 1 domain 274 325 IPR014811 -
Gabi1471g00011 978 ProSiteProfiles Piwi domain profile. 627 926 IPR003165 GO:0003676
Gabi1471g00011 978 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 127 927 - -
Gabi1471g00011 978 FunFam Protein argonaute 7 321 446 - -
Gabi1471g00011 978 MobiDBLite consensus disorder prediction 1 91 - -
Gabi1471g00011 978 Pfam PAZ domain 344 452 IPR003100 GO:0005515
Gabi1471g00011 978 SMART PAZ_2_a_3 327 460 IPR003100 GO:0005515
Gabi1471g00011 978 SUPERFAMILY Ribonuclease H-like 611 926 IPR012337 -
Gabi1471g00011 978 Gene3D - 697 978 IPR036397 GO:0003676
Gabi1471g00011 978 CDD PAZ_argonaute_like 327 441 - -
Gabi1471g00011 978 Gene3D paz domain 322 446 - -
Gabi1471g00011 978 SMART DUF1785_2 273 326 IPR014811 -
Gabi1471g00011 978 CDD Piwi_ago-like 489 925 IPR045246 -
Gabi1471g00011 978 SUPERFAMILY PAZ domain 323 480 IPR036085 GO:0005515
Gabi1471g00011 978 Pfam N-terminal domain of argonaute 128 263 IPR032474 -
Gabi1471g00011 978 ProSiteProfiles PAZ domain profile. 327 442 IPR003100 GO:0005515
Gabi1471g00011 978 Pfam Piwi domain 628 925 IPR003165 GO:0003676
Gabi1471g00011 978 Gene3D - 508 690 - -
Gabi1471g00011 978 MobiDBLite consensus disorder prediction 40 81 - -
Gabi1471g00011 978 MobiDBLite consensus disorder prediction 935 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1471g00011 Gabi-Chr1471 155309 159857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1471g00011 54 948 Eukaryotic Initiation Factors Gene Family AT1G48410 33.753 1.21e-146 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1471g00011 K11593 - gmx:100805250 1353.58