Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1471g00003 ATGAAAGAGGGTGGTAGGAAACAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTCGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTCCCAGCGGATGAGCCTCAGAAGTTTGCTAATGTGCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGCGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCGAATGCAAGAGTGAGAGACCCTGTGTATGGCTGTGTAGGGGCCATCTCTTCTCTTCAGAAACAAATTGATATGCTTCAGACCCAATTGGCCGTGACCCAAGCTGAAGCAGTGCACCTAAGGGTACGCCAGAGTGCATCACTATGGAACCCAGCCCATAGCCCCACTAGCCCAACCAATACTGGCTCTCCATCACAATCCAAGCCTATGTTTGACATGGACATGGTGGTGGACCACGCCAATTATGGTGATTCAATGTGGTAA 492 0.5 MKEGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQKQIDMLQTQLAVTQAEAVHLRVRQSASLWNPAHSPTSPTNTGSPSQSKPMFDMDMVVDHANYGDSMW 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1471g00003 163 MobiDBLite consensus disorder prediction 125 144 - -
Gabi1471g00003 163 Coils Coil 92 112 - -
Gabi1471g00003 163 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Gabi1471g00003 163 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Gabi1471g00003 163 MobiDBLite consensus disorder prediction 125 146 - -
Gabi1471g00003 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1471g00003 Gabi-Chr1471 30898 34785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1471g00003 1 163 AS2 family AT1G31320 70.930 1.26e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1471g00003 LOB 5.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1471g00003 - - gmx:100306560 296.204