Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1470g00029 ATGGAACACAATTTCGGTCAAGATTCTGTTCCTGCATCTGGGTCCTTTGATAAGTCTAGGGTTTTAAATGTTAAGCCGTTGAGAACTCTTGTCCCTGTGTTTCCTTCACCATCTAATCCCTCTTCATCTTCAACTCCACAAGGTGGTGCTCCTTTTGTTTGTGTTTCTCCCTCTGGTCCTTTCCCCTCTGGGGTTGCACCCTTCTACCCTTTCTTTATCTCACCTGAGTCCCAGAGGCTTTCTGAACAAAATGCACAAACTCCTGCCGGTCAACGTGTACCTGCAGCCCCAATATCTACTGCAGTTCCGATTAATTCATTTAGGACACCTACTGGGGCTACAAATGGACATGTGGGCTCATCGCGAAGGACTGCCCGAAATCGTGGACAGTTTACAGAGGAAGATGGTTACAGTAATGTTGAGATGAGTGGAATTGATGCAGAAGATGGAACTGGGGATAGGAGGTCGAGGCGCAAGTCACAGAAGAATGTTGAGATGGGTGAAATTGACACAGGAGATGGTACTGGGGATGGGAGGTCAAAGCGCAAGAAGACGGCAAAGGAACGGCGGGGTGGCGGTTCTGGTGGTGATGATTCGGATGCTTTGGCTAATGACATTCTCAAAACAATTAACCCCGTAGTGTTTGATGTACTAAATCAACCTGAGGGTAGCAGGGACGCAGTTGCATATACACTTATGGTATATGAAGTGCTACGAAGAAAGCTAGGACAAATTGAAGAGACAACCAAGGAAGCCCATTCTGGAGCAAAACGGCCTGATTTGAAGGCAGGTACAATTATGTTGAGAAAAGGGGTTCGCACTAATAGCAAGAAACATTTTGGAGTTGTGCAAGGTGTTGAGATTGGGGATATTTTCTTTTTCAGATTTGAATTGTGCTTAGTAGGATTGCATTCTCCTTCTATGGCTGGAATTGATTACATGACTTCCAAAGCCAGTCAAGAGGAAGAGCCTTTAGCTGTCAGTATTGTCTCATCTGGAGGGTATGAAGATAATGTGGATGATGGGGATGTTCTGATTTACAGTGGCCAAGGCGGGGCTAGCCGTGAAAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCATTGGAAAAGAGCCTGCATCGAGGTAATGATGTGAGAGTAATTAGGGGTTTGAAGGATATAGCGCATCCAACTGGAAAGGTATATGTCTACGATGGTCTTTACAAGATTCAGAATTCGTGGGTGGACAAAGCAAAATCTGGTTTCAACGTATTCAAGTATAAATTAGTCAGGTTGCCTGGGCAGCCTGAAGCATACATGATATGGAAATCCATTCAACAATGGACTGAGAAGTCTGCTTCTAGAATGGGGGTTATATTGCCTGATCTTACTTCTGGGGCCGAAAATTTACCTGTTTGTCTTGTGAACGATGTTGATAACGAGAAGGGCCCTGCATATTTCACTTACTGCCCTGGTCTCAAGAATTTGAAGCTAACAGCTCCTTTGGAATCTAATGCTGGATGTTCTTGCATTGGTGGATGCCAACCTGGCAATTTTAACTGTCCTTGCATACAAAAGAATGGAGGTTATCTCCCATATTATGCAAATGGGGTACTTGCGGACCTAAAATCCGTGATTCATGAGTGTGGTCCTTCGTGTCAGTGCCCTCCTAATTGCCGAAACCGGGTTTCGCAAGGTGGCTTGAAATTTCGTTTGGAGGTGTTTAGAACCAAGGATAAAGGGTGGGGTCTAAGATCATGGGATCCTATTCGTGCTGGAACCTTCATATGTGAGTATGCAGGGGAAGTTATAGATAATGCTAGAGTAGAGGAGCTAGGTGGTGAAAATGAAGATGATTACATTTTTGATTCTACTCGCATTTATCAGCAATTGGAAGTTTTTCCTGGTGACACTGAAGCTCCAAAGATCCCATCACCCCTTTATATAACAGCAAGAAATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTCGTACGTGAAAATAAGAATGAATCTGATCTCCACATTGCTTTTTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACTTATGATTATGGGATAGTTCTTCCTCTCAAAGTAGGCCAGAAGAAAAAGAAATGCTTCTGTGGATCTGCGAAATGCAGGGGTTACTTTTGTTAG 2184 0.4386 MEHNFGQDSVPASGSFDKSRVLNVKPLRTLVPVFPSPSNPSSSSTPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAQTPAGQRVPAAPISTAVPINSFRTPTGATNGHVGSSRRTARNRGQFTEEDGYSNVEMSGIDAEDGTGDRRSRRKSQKNVEMGEIDTGDGTGDGRSKRKKTAKERRGGGSGGDDSDALANDILKTINPVVFDVLNQPEGSRDAVAYTLMVYEVLRRKLGQIEETTKEAHSGAKRPDLKAGTIMLRKGVRTNSKKHFGVVQGVEIGDIFFFRFELCLVGLHSPSMAGIDYMTSKASQEEEPLAVSIVSSGGYEDNVDDGDVLIYSGQGGASREKGASDQKLERGNLALEKSLHRGNDVRVIRGLKDIAHPTGKVYVYDGLYKIQNSWVDKAKSGFNVFKYKLVRLPGQPEAYMIWKSIQQWTEKSASRMGVILPDLTSGAENLPVCLVNDVDNEKGPAYFTYCPGLKNLKLTAPLESNAGCSCIGGCQPGNFNCPCIQKNGGYLPYYANGVLADLKSVIHECGPSCQCPPNCRNRVSQGGLKFRLEVFRTKDKGWGLRSWDPIRAGTFICEYAGEVIDNARVEELGGENEDDYIFDSTRIYQQLEVFPGDTEAPKIPSPLYITARNEGNVARFMNHSCSPNVLWRPVVRENKNESDLHIAFYAIRHIPPMMELTYDYGIVLPLKVGQKKKKCFCGSAKCRGYFC 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1470g00029 727 ProSiteProfiles YDG domain profile. 281 427 IPR003105 -
Gabi1470g00029 727 MobiDBLite consensus disorder prediction 147 182 - -
Gabi1470g00029 727 ProSiteProfiles SET domain profile. 566 701 IPR001214 GO:0005515
Gabi1470g00029 727 ProSiteProfiles Pre-SET domain profile. 502 563 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1470g00029 727 MobiDBLite consensus disorder prediction 78 200 - -
Gabi1470g00029 727 MobiDBLite consensus disorder prediction 34 50 - -
Gabi1470g00029 727 SMART G9a_1 276 431 IPR003105 -
Gabi1470g00029 727 Gene3D SET domain 451 726 IPR046341 -
Gabi1470g00029 727 Pfam Pre-SET motif 460 558 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1470g00029 727 Pfam SAD/SRA domain 279 431 IPR003105 -
Gabi1470g00029 727 Gene3D - 264 450 IPR036987 -
Gabi1470g00029 727 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 147 726 IPR025794 GO:0016571
Gabi1470g00029 727 SMART set_7 566 707 IPR001214 GO:0005515
Gabi1470g00029 727 Pfam SET domain 577 701 IPR001214 GO:0005515
Gabi1470g00029 727 ProSiteProfiles Post-SET domain profile. 711 727 IPR003616 -
Gabi1470g00029 727 SUPERFAMILY PUA domain-like 263 446 IPR015947 -
Gabi1470g00029 727 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 264 446 - -
Gabi1470g00029 727 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 155 720 - -
Gabi1470g00029 727 SMART preset_2 456 550 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1470g00029 727 SUPERFAMILY SET domain 442 707 IPR046341 -
Gabi1470g00029 727 MobiDBLite consensus disorder prediction 102 137 - -
Gabi1470g00029 727 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1470g00029 Gabi-Chr1470 192259 196510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1470g00029 6 726 Su(var)3-9 homologs AT1G73100 47.383 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1470g00029 SAD_SRA 9.1e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1470g00029 K24405 - gmx:100786650 1204.12