Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1470g00023 ATGGATTGTGTTACTGCAATTGCAACAGGAGTTGTATCCAAAATTGGAGAATTGCTTGTTGAGCCAATTGGTCAACAATTAGGCTATTTGATTTGCTATGATTACAATGTCAAAAATGTGAACAATGTGGTTCAAGCTTTAAAAGATAGGAAAGTAGAAGTCCAAGGAATGGTGAATGCTGACAAAAAGAATGGGCGTGTAATTGTACCACATGTGGAAAACTGGTTGAAAGAGGTTGATGATATGTTAGTTTTGCTACAAGAATTCAATGAAAATGAAGTCAGCAGGAACAAGAAGTGCCTTGGTGGATTGTGTCCCAATTTGAACTCTCGTTATTCATTAAGCAAGAGGGCTAAAAAGATGAAGGAGAAAATTGTGATCTTAAAAGAAGAGAAACTTGAGATCATATCCAACCCAGCAACTCCACTGAAATTGTCATCCATCTTTGCAAAAGACATTAAAGGCTTTGAGTCTAGAAAATCAATCATAAGAGAAGTCATAGAGAAGCTCAAGGATGAAAGGTTTAAAAGAATCAGCATTTGTGATGGGGGAGTGGGAAAAACCACTTTGGTGAAAGAAGTGATCAAAATTGTAGAAGCAGAGAAACTATTTGATGCAGTTGCATTCACGGTGGTCTCTCAAACTCCAGACCCTAGGAAGATCCAAGGTGATATTGCTTATAGTCTTGGCTTGAAACTTGATAGCGAGACATTGCAAGAAAGAGCACAACAACTCCTTGAAAGGATAAGCAACAATGCTACAACAATCCTTATAGTGCTAGATGATGTTTGGACAGAGCTTGATTTTGAGTCCATTGGTCTTCCTTCAAATAAGGATCACAAGACTTGCAAATTTATATTCACATCAAGAAATGAAGGAACATGCCACAAGATGGGAAGTCAAAAAACTTTCAATGTTAATATCTTGTCCAGGGAAGAATCATGGGATCTTTTCCGGGATATAACAAGTAATGATCTTGTCAATAGTCCTGATCTCAATTCCATAGCAAAAGATATTTCAAATGAATGTGGTGGCTTGCCTATTACCCTTGTTACTGTTGGAAAAGCGCTAGTAGGAAGTACACAGAAGTATGTTTGGGAGGATGCACTCAAACAATTAAGAAAGTCGTCAGGTTCTTTCTCAGATGTGCAAAAATGTATTGAACTGAGTTGCAATCTGTTGGATGAAGAAAAAGCCAAACGTTTCCTTTATCTTTGTTGCTTATATCCAGAAGATACTGATATCCCTATTGAAGATCTAATGCGGGACGGATGGGGTCTACAATTATTCGAAGATCAAGATGCATTATGGGAAGTAAGGAATAAAGTGCATACCTTGATAAATAATCTAAGGAGGCGCTACTTGTTGTTGGATAGTAATGATGAAGAGTGTGTGAAGATGCATGATTTTGTACGTGATGTTGTCATATTAATTGCATCCAGAAATGAAAATGATTTTAAGATACAATGTGATGCTGAAAAGAAGTGGCATGAAAAAAGTACATGGAATTCTAGTTGTGTAGTTTAA 1527 0.3694 MDCVTAIATGVVSKIGELLVEPIGQQLGYLICYDYNVKNVNNVVQALKDRKVEVQGMVNADKKNGRVIVPHVENWLKEVDDMLVLLQEFNENEVSRNKKCLGGLCPNLNSRYSLSKRAKKMKEKIVILKEEKLEIISNPATPLKLSSIFAKDIKGFESRKSIIREVIEKLKDERFKRISICGXGGVGKTTLVKEVIKIVEAEKLFDAVAFTVVSQTPDPRKIQGDIAYSLGLKLDSETLQERAQQLLERISNNATTILIVLDDVWTELDFESIGLPSNKDHKTCKFIFTSRNEGTCHKMGSQKTFNVNILSREESWDLFRDITSNDLVNSPDLNSIAKDISNECGGLPITLVTVGKALVGSTQKYVWEDALKQLRKSSGSFSDVQKCIELSCNLLDEEKAKRFLYLCCLYPEDTDIPIEDLMRDGWGLQLFEDQDALWEVRNKVHTLINNLRRRYLLLDSNDEECVKMHDFVRDVVILIASRNENDFKIQCDAEKKWHEKSTWNSSCVV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1470g00023 509 PRINTS Disease resistance protein signature 177 192 - -
Gabi1470g00023 509 PRINTS Disease resistance protein signature 251 265 - -
Gabi1470g00023 509 PRINTS Disease resistance protein signature 344 358 - -
Gabi1470g00023 509 Coils Coil 153 173 - -
Gabi1470g00023 509 Pfam NB-ARC domain 161 378 IPR002182 GO:0043531
Gabi1470g00023 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 406 IPR027417 -
Gabi1470g00023 509 Gene3D - 142 309 IPR027417 -
Gabi1470g00023 509 Gene3D - 310 396 IPR042197 -
Gabi1470g00023 509 SMART AAA_5 174 329 IPR003593 GO:0016887
Gabi1470g00023 509 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 24 491 - -
Gabi1470g00023 509 FunFam Probable disease resistance protein At1g61300 144 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1470g00023 Gabi-Chr1470 134990 136518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1470g00023 178 456 WRKY Transcription Factor Family AT5G45050 25.338 1.98e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1470g00023 - - var:108344489 508.064