Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1470g00017 ATGGGGAAGAAGCGAAAGCTCGCACCGAAATCCACTGAAACCGCTGAACCCCCACTGAAGCAGCATCAATCTCAACCTCAACCTCAATTGGAACCTGAACATGACAATGCAGCTGAAGAAGAATACGAAGAAGTCGAAGAAGAAGTAGAGGTCGAACAAGAGGAAGAAGAAGATGAAGAACAACAACAAGATGATGAACAACAACAGCAACAACAAGAAGAAGACGAGGAACCGATTCAGAAGCTTATAGAACCCTTCGGCAAGGAACAAATCATGAACCTACTATGCGAGGCGGCGACCAAGCACCGTGACGTGGCGGATCGGATCCGCAAGGTCGCCGACGGGGACGCCGTCCACCGGAAGATCTTCGTGCACGGCCTCGGATGGGACACCACCGCCGCAACACTAATCAACGCTTTCAGCCAGTACGGCGAGATCGAGGACTGCAAGGCGGTGACAGACAAGGTCTCCGGAAAGTCCAAGGGCTACGGTTTCATCCTCTTCAAGACGCGCCGCGGCGCGCGGAAGGCCCTCAAGGAGCCGCAGAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCATCGATCGGCCCGGTCCAGCAGCAGCCGGTTGCCGCGGTGCCACAGCTGCAGCAGCCGGCGCAACCAGCTTTTTCGGCTGGAGTTTCGGAGTACACGCAGAGGAAGATCTATGTGAGCAACGTTGGGGCGGAATTGGACCCGCAGAAGCTGTTTGCTTTCTTTTCGCGGTTCGGTGAGATCGAGGAAGGGCCGTTGGGGCTTGATAAGGTCACTGGAAAACCGAAAGGGTTCTGCTTGTTCGTTTACAAGAGTGCGGAGAGTGCGAAGAGGGCCTTGGAGGAGCCTCACAAGGAATTCGAGGGCCATATTTTGCACTGCCAAAGGGCAATTGATGGTCCCAAGCAGGGGAAGTTGCAGCAGCTCGTGAATCCTCAGAGTCAGAGGCCCCAATTTCAGAGAAATGATAGTGCTGGTTTTGTTGGTGGTAGTGGTGGTGGTGTTGCCCAACCGGTGGGGCACTTGATGGCTCCGGCTGGACCAGCAATCGGGTTTAATCAGTCAGCTACTGCTGCGCAGGCTCTGAATCCAGCTCTCGGGCAAGCGCTGACTGCACTGCTTGCGTCCCAGGGTACATTGGGGCTTACTAATTTGTTGGGGAGTCTCGGAACAAGTGCGGCGGTTAATCCCGTTGTTCCAGCTGCGGGGCATGGAGTGCAGGGTGGTTACAATGTGCAGCCAAATATAAGCCCCGGTGTTATTGGAGGATATGGGAATCAGGTAGGATTGCAGGCGGCATATCCGAATCAGCAGATAGGGCAGGGTGGCTCTGGAAGAGGCCAATATGGTGGCGTTCCACCTTACATTGGGCACTAG 1398 0.5522 MGKKRKLAPKSTETAEPPLKQHQSQPQPQLEPEHDNAAEEEYEEVEEEVEVEQEEEEDEEQQQDDEQQQQQQEEDEEPIQKLIEPFGKEQIMNLLCEAATKHRDVADRIRKVADGDAVHRKIFVHGLGWDTTAATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARKALKEPQKKIGNRMTACQLASIGPVQQQPVAAVPQLQQPAQPAFSAGVSEYTQRKIYVSNVGAELDPQKLFAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESAKRALEEPHKEFEGHILHCQRAIDGPKQGKLQQLVNPQSQRPQFQRNDSAGFVGGSGGGVAQPVGHLMAPAGPAIGFNQSATAAQALNPALGQALTALLASQGTLGLTNLLGSLGTSAAVNPVVPAAGHGVQGGYNVQPNISPGVIGGYGNQVGLQAAYPNQQIGQGGSGRGQYGGVPPYIGH 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1470g00017 465 SMART rrm1_1 121 193 IPR000504 GO:0003723
Gabi1470g00017 465 SMART rrm1_1 230 302 IPR000504 GO:0003723
Gabi1470g00017 465 Coils Coil 35 76 - -
Gabi1470g00017 465 SUPERFAMILY RNA-binding domain, RBD 120 203 IPR035979 GO:0003676
Gabi1470g00017 465 MobiDBLite consensus disorder prediction 36 73 - -
Gabi1470g00017 465 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 34 309 - -
Gabi1470g00017 465 MobiDBLite consensus disorder prediction 16 31 - -
Gabi1470g00017 465 SUPERFAMILY RNA-binding domain, RBD 204 329 IPR035979 GO:0003676
Gabi1470g00017 465 Gene3D - 45 200 IPR012677 -
Gabi1470g00017 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 305 IPR000504 GO:0003723
Gabi1470g00017 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 299 IPR000504 GO:0003723
Gabi1470g00017 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Gabi1470g00017 465 MobiDBLite consensus disorder prediction 1 77 - -
Gabi1470g00017 465 Gene3D - 201 318 IPR012677 -
Gabi1470g00017 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1470g00017 Gabi-Chr1470 38287 41516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1470g00017 228 417 C2H2 Transcription Factor Family AT2G19380 28.426 5.31e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1470g00017 K12741 - gmx:100784200 596.275