Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1470g00004 ATGCCGCTCCTGCTGGTGGAATTGGGAAACATCGTTTACGATGGACAAGCGATCTTCATGACCGTTTTGTGGATGCAATCACACAACTTGGTGGACCAGATAGTGGGAGCAACACCGAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCACGTTAAAAGCCATTTACAGAAGTATCGCCTTGCAAAGTACTTGCCTGAATCATCAGCTGATGGTAAAGACTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCAGATTCTTCCCCGGGATTGCAAATCAGTGACGCTTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAACAGCTTGAGGTTCAAAAGCAGTTACAAATGAGGATTGAAGCACAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACACTTCCATTGTCCCATGATAAGCAAAATCATCCCCAGTTAGAGCCTTCTGGATCTAGTGATACCCTTGCAGGCACTTTGCCTCCACTTAAAAAACAGAGAATCGATGATGGTTCAAAGGATACCTTCACTGCTTCACAAGTGCCAAGAAAGACCGCACAGAATAATGACTCTAATGTTGGTCAGTTGGATCCAAACTTGAATGAAGATGATGCTGAGTTTGGATTTGATTTGGAGAAAGAAAGGGTTGAAGATAAGGAGAGTGAGCAGTAA 735 0.4367 MPLLLVELGNIVYDGQAIFMTVLWMQSHNLVDQIVGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESSADGKDSKDEKRNSGDSISGADSSPGLQISDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQLEPSGSSDTLAGTLPPLKKQRIDDGSKDTFTASQVPRKTAQNNDSNVGQLDPNLNEDDAEFGFDLEKERVEDKESEQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1470g00004 244 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 37 192 IPR044848 GO:0003700
Gabi1470g00004 244 MobiDBLite consensus disorder prediction 194 219 - -
Gabi1470g00004 244 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 66 IPR006447 GO:0003677
Gabi1470g00004 244 MobiDBLite consensus disorder prediction 72 99 - -
Gabi1470g00004 244 MobiDBLite consensus disorder prediction 227 244 - -
Gabi1470g00004 244 Pfam MYB-CC type transfactor, LHEQLE motif 99 145 IPR025756 -
Gabi1470g00004 244 SUPERFAMILY Homeodomain-like 36 65 IPR009057 -
Gabi1470g00004 244 MobiDBLite consensus disorder prediction 72 88 - -
Gabi1470g00004 244 Gene3D - 16 69 - -
Gabi1470g00004 244 MobiDBLite consensus disorder prediction 156 244 - -
Gabi1470g00004 244 MobiDBLite consensus disorder prediction 156 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1470g00004 Gabi-Chr1470 17175 21164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1470g00004 46 150 G2-like Transcription Factor Family AT2G01060 74.286 2.49e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi1470g00004 Myb_CC_LHEQLE 8.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1470g00004 - - tpra:123889278 331.643