Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi146g00002 ATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAAAAAGGCGGATATATGGTGCTGGAGTGCTCCTGCATGCTCTGTTGAAAAGGACACATGGCAATAAAAGATGA 609 0.4778 MGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLAGSPAYVAPEVLLGRYSKRRIYGAGVLLHALLKRTHGNKR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi146g00002 202 SUPERFAMILY Protein kinase-like (PK-like) 8 195 IPR011009 -
Gabi146g00002 202 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gabi146g00002 202 Gene3D Transferase(Phosphotransferase) domain 1 3 199 - -
Gabi146g00002 202 Pfam Protein kinase domain 12 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi146g00002 202 SMART serkin_6 11 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi146g00002 202 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 194 - -
Gabi146g00002 202 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi146g00002 202 ProSiteProfiles Protein kinase domain profile. 11 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi146g00002 Gabi-Chr146 8165 9372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi146g00002 1 194 EF-hand Containing Proteins AT2G38910 42.233 9.20e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi146g00002 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi146g00002 - - pcin:129303422 330.872