Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1469g00007 ATGGGGAGTATGGGTGAGTCGGACAGAAAACGGCGTCACTTTAGCTCCTTGTCCCCTACCCCTGCTACTGCTACTGCCAAGAAGCTACCCTTCTTACCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTATCAAAATCAAAAGCTTACACAGAAATTAGAAACTCAGAAGTTAGAGTATGCAGCACTTGAGAATAAATTTTCTCAACTGAAGGAGAGGCAACAGTCATATGGTTCCACTATAGCAGTGGTCAAGAACTCTTGGGAGGAGATGGTTAATGATTTGGAGTCATGTTCTGAACACACGAGAGAGTCCAGCAGCAAATCGGTTTCAAGATTTGCATCAATGATGGAAGATGGTAGTTCATCAACTGTTCAGGATGTTTTTCTCAGCCGACTTTTGCAAACTGGTGCTACTGAAAGTTCTTCCACTTGTAACTTTGCAAACCAGATGGAACAACATAGAGAAAATACTACCGAAAAAGCTAAATGCGTTTTAAAAAATATAGTGACTGCTATTAATGACTTTTGGTGTCTGAAGGATGCATTGCATACTGCAGTACTGAAAAAGCTTCCTGATGATGTTTCATGTAGGCCGAAGTTGTCCATTGATCTAGAGGTGGAAGTTAAAAACCTGAGATTGGCACTCAGTGAACTTCATTTAAAACACAAATCTTTAGCAAGTGATTTCCAAATTCAGAGAGATCTTGATGCCAAAAATAAAGCTGACCTTAAAAGATTAAGAGGAGACCTAGAAAGCACTATTGCCGAGTTAGAAGAAAGCAATCACAAACTTGCAACTCTTAAAGCAGAGAGAGATGCAGCAAATGGGGCAGTTCTCCCAGTCATAAATGTTGGAAGTACACACGTTACTAGTGATAAGATCAGAGACAAGCAAAAGGATTTGCAAGATATGGAATCTACTCTGAAGGAGTTATTGGACCAAGGTTCATCTCGATTAGTGGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTGCAGCAGTTGTGTGATCTACAGAACACATTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCATTCCAATTGGTTAGAGATCAGATAGAAAAGTCAAAATCAGAAGTTCTGGAGTATCAGGCCTTATACGAGAAACTACAGGTTGAGAAGGATAATCTTGCTTGGAGGGAGAGGGAGTGGTATGTTAAGAGTGATTTAGCAGATATTTTTCAAAGATCTGTGGCAGTCTCAGATATTAGAGCGGCTGATATATGCACTGAGATACAGAAAAAAATAGAGGAAAGAAATGTGATTGAAAATAAGCTGAAAGAGGAAGCAAGAGAACCTGGAAGGAAACAGATTATTGCAGAATTTAGATCTCTCGTTTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTCAACTAACTAAGTATAAAGAATCAGCTTCGGATATCCATTCTCTGCGTGCAGATGTGCAGTCTATTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGACGTTTTATCTGTTAGGTCTGCTGGTCAACTTGCTGAGATAAAAAAGCTTCTTGGTGTGGTTCAAGATTTGAGAGAAAGTGAGACAGACTTGAAGTTGATACTGGAAATGTATAGACATGAGTCTATTGATTCAAGGGATGTCATGGAAGCACGTGATGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAATTTCGAGTTAAGATGGCAAATGAAGCAGAGGCCAGATCTCAACAAAAGCTGGCTGCTGCTGAAGCTGAGATAGCAGACATGAGACAGAAATTAGAAGCTTCTAAAAGGGACATGTGTAAGTTGTCTGATGTCTTGAGATCTAAAAACGAGGAAAATGAGGCCTACTTATCTGAAATAGAGACTATTGGACAGGCATATGATGACATGCAAACTCAAAATCAACAGCTGTTGCAGCAGATTACCGAGAGAGATGATTACAATATTAAGCTTGTTCTAGAGGGTGTGAGGGCAAGACAAAAGCAGGATTCGTTGGTCATGGAGAAGCGGGTAATGGAACAAGAGATCCAGCAAGCAAGTGTATCCCTGAATTTATATGACATCAAAGCTGCAAGAATTGAAGACCAGTTTAAGCTTTGTTCAGATCAGATTCAAAGACTTGCAGAGGATAAACTTCAAAGTTCTGTCAATTTGGAAAATACACAAAGAAGGTTGTCGGATATTAGAAGATCATCTCAACAGGTTAGGGATACAGTGGTGGAAGTGCAATCTAAAATTACTAGTAGTCGAGTGACTCGTATGGAGTTAGAAGTAGAACTCGAGAAAGAAAGGTTTGCGAAGAAAAGAATAGAGGAGGAGCTGGAGGTTGCTCGGAGAAAGTTTTCCTGCCTTAAAGCACAGAATGAGGGCTGCTCAGTAACTGAGAAGCTTCAACAAGAGCTGGGAGAGTACAGGGAAATTGTGAAGTGCAGTATCTGCCAAGACAGGACAAAGGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAATTCCTGCATCCAGAAAGTTGCTGGGAGTAGGCACCGTAAATGTCCACAGTGTGGTACAAGTTTTGGGGCTAATGATGTTAAGCCGGTTTATTTGTAA 2643 0.4003 MGSMGESDRKRRHFSSLSPTPATATAKKLPFLPISEDKKLDIAVLQYQNQKLTQKLETQKLEYAALENKFSQLKERQQSYGSTIAVVKNSWEEMVNDLESCSEHTRESSSKSVSRFASMMEDGSSSTVQDVFLSRLLQTGATESSSTCNFANQMEQHRENTTEKAKCVLKNIVTAINDFWCLKDALHTAVLKKLPDDVSCRPKLSIDLEVEVKNLRLALSELHLKHKSLASDFQIQRDLDAKNKADLKRLRGDLESTIAELEESNHKLATLKAERDAANGAVLPVINVGSTHVTSDKIRDKQKDLQDMESTLKELLDQGSSRLVELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQLVRDQIEKSKSEVLEYQALYEKLQVEKDNLAWREREWYVKSDLADIFQRSVAVSDIRAADICTEIQKKIEERNVIENKLKEEAREPGRKQIIAEFRSLVSSFPEEMGSMQSQLTKYKESASDIHSLRADVQSISSILDRKVKECDVLSVRSAGQLAEIKKLLGVVQDLRESETDLKLILEMYRHESIDSRDVMEARDAEYRAWAHVQSLKSSLDEHNLEFRVKMANEAEARSQQKLAAAEAEIADMRQKLEASKRDMCKLSDVLRSKNEENEAYLSEIETIGQAYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQKQDSLVMEKRVMEQEIQQASVSLNLYDIKAARIEDQFKLCSDQIQRLAEDKLQSSVNLENTQRRLSDIRRSSQQVRDTVVEVQSKITSSRVTRMELEVELEKERFAKKRIEEELEVARRKFSCLKAQNEGCSVTEKLQQELGEYREIVKCSICQDRTKEVVITKCYHLFCNSCIQKVAGSRHRKCPQCGTSFGANDVKPVYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1469g00007 880 Coils Coil 298 318 - -
Gabi1469g00007 880 MobiDBLite consensus disorder prediction 1 15 - -
Gabi1469g00007 880 SUPERFAMILY RING/U-box 820 879 - -
Gabi1469g00007 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Gabi1469g00007 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Gabi1469g00007 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Gabi1469g00007 880 Coils Coil 771 805 - -
Gabi1469g00007 880 Coils Coil 736 756 - -
Gabi1469g00007 880 Coils Coil 366 386 - -
Gabi1469g00007 880 Coils Coil 638 658 - -
Gabi1469g00007 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Gabi1469g00007 880 Coils Coil 244 281 - -
Gabi1469g00007 880 Coils Coil 42 76 - -
Gabi1469g00007 880 Coils Coil 425 445 - -
Gabi1469g00007 880 SMART ring_2 828 866 IPR001841 -
Gabi1469g00007 880 FunFam E3 ubiquitin protein ligase 809 880 - -
Gabi1469g00007 880 CDD RING-HC_Bre1-like 821 878 - -
Gabi1469g00007 880 Pfam Zinc finger, C3HC4 type (RING finger) 826 868 - -
Gabi1469g00007 880 Coils Coil 582 616 - -
Gabi1469g00007 880 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1469g00007 Gabi-Chr1469 167616 203353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1469g00007 811 879 C3H Transcription Factor Family AT2G42030 34.247 1.97e-07 52.4