Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1469g00005 ATGATCAGCCATTCTTTCTTTACAACACTCATCAAACCCCTTACCTTGGGAAAACGTACAATCATGGAAAGTGATGCTAGGGAAAACTTCTTTAGCACATCTACCACCAATACTAAAACAACCACCACATTCACATCCTCCTCCCCTTCCTCTTCAACATCATCAACAACAACAACAGCACCAACATCTTCTACCTCAAACTCAAATTCATGCATCAAACAAGCCTCCATAAAAAGCCCTCCAAGTGACTCAACAAGAAGAGCTCAAAACTCACAAAATGACAAAAAAAGGCAGAGAAGTGAGAATGAGGGAAAACACTCCACTTACAGAGGTGTAAGAATGAGAGCTTGGGGTAAATGGGTGTCTGAGATTCGTGAGCCAAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCAGATATGGCAGCTAGAGCACATGATGTAGCAGCTTTAGCTATCAAAGGCCATTCAGCTTACCTCAATTTTCCTAATTTGGCTCAACATCTTCCAAGGCCTCTCACCGCATCTCCCAAGGACATTCAGATTGCAGCTGCAAAAGCAGCAACCAATTTCTTTGAGGAGACTAAGCATTGTCAAGTTGAAGCTGAACATACCAAAGCAGAACAAGGTTCATGTTCAAATCTATCATTGGAGAGTACTCAAGAGTCATCAAGTTCTCCCTCTAGTAATGATGATGACACACTGTTTGACCTACCAGATCTTTTCCCAGATGGAAAAAATGGACTTTTCTCCTATTCTTCTTCTTCTTCTTCTTGGCATTTATGTGCAGTTGATACTGGGTTCAGGCTTGAGGAGCAACTTTTGTGGGAGAAATAG 843 0.4176 MISHSFFTTLIKPLTLGKRTIMESDARENFFSTSTTNTKTTTTFTSSSPSSSTSSTTTTAPTSSTSNSNSCIKQASIKSPPSDSTRRAQNSQNDKKRQRSENEGKHSTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTADMAARAHDVAALAIKGHSAYLNFPNLAQHLPRPLTASPKDIQIAAAKAATNFFEETKHCQVEAEHTKAEQGSCSNLSLESTQESSSSPSSNDDDTLFDLPDLFPDGKNGLFSYSSSSSSWHLCAVDTGFRLEEQLLWEK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1469g00005 280 MobiDBLite consensus disorder prediction 89 110 - -
Gabi1469g00005 280 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Gabi1469g00005 280 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Gabi1469g00005 280 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Gabi1469g00005 280 MobiDBLite consensus disorder prediction 211 235 - -
Gabi1469g00005 280 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Gabi1469g00005 280 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Gabi1469g00005 280 MobiDBLite consensus disorder prediction 36 110 - -
Gabi1469g00005 280 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Gabi1469g00005 280 MobiDBLite consensus disorder prediction 36 88 - -
Gabi1469g00005 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 88 246 - -
Gabi1469g00005 280 SUPERFAMILY DNA-binding domain 107 166 IPR016177 GO:0003677
Gabi1469g00005 280 CDD AP2 107 167 IPR001471 GO:0003700|GO:0006355
Gabi1469g00005 280 MobiDBLite consensus disorder prediction 211 239 - -
Gabi1469g00005 280 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1469g00005 Gabi-Chr1469 143279 152934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1469g00005 96 277 AP2-EREBP Transcription Factor Family AT2G44940 52.885 1.61e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi1469g00005 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1469g00005 - - pvu:PHAVU_008G141000g 294.278