Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1468g00030 ATGAGGCCGAATCAACTGCCACCACCCACCGGCTCTGCTTCTGCATCCAACAACCGGGACCGTCCCCAGCGCCGCCGCAAGGACAACCTGACCTTGCCGCTGCCTCAGCGGAACGCACCATTACCCATGCCACTTCCCCTTCCGCCGTCGTCCGCCACCTCAACCTCCGGGCCCACTTACCAGCTGATCCCTTTCTCGGAGCTCGATCGCATCAGTCGCATCGGCAGCGGGAGCGGCGGCACCGTCTACAAGGTGGTCCACCGACCCACCGATCGCGTCTACGCCCTCAAGGTGATATACGGTCATCACGAGGATTCGGTGCGTCGGCAGATCCACCGCGAGATCCAGATCCTTCGCGACGTTGACGATCAGAACGTGGTTCGGTGCCATGACATGTACGATCACAACGGCGAAATCCAGGTGCTTCTCGAGTTCATGGACGGTGGCTCGCTGGAAGGGAAACACATCCCGCACGAGCAACAGCTCGCAGATCTAGCTCGCCAGATTCTCAAGGGGCTCGCCTACCTCCACCGCCGGCACATCGTTCACCGCGACATCAAGCCGTCGAACCTTCTGATCAACTCGAGGAAGCAGGTGAAGATCGCGGACTTCGGTGTGGGTCGGATTCTGAACCAGACGATGGATCCGTGCAATTCGTCGGTGGGTACGATCGCGTACATGAGCCCGGAGAGGATAAACACTGACATCAATGATGGGCAATACGACGCATACGCTGGAGATATATGGAGCCTTGGGGTTAGCATCTTGGAGTTTTACATGGGCAGGTTTCCCTTCGCCGTTGGCAGGCAAGGTGATTGGGCGAGCTTGATGTGTGCCATTTGTATGTCTCAGCCACCCGAAGCCCCTCCAACGGCCTCGCCTGAGTTTAGGGATTTCGTTTCCCGGTGTTTGCAGAGAGATCCCTCTCGTAGGTGGAGCGCTTTAAAGTTGCTGAATCACCCTTTTATAGCTCAGGGGATTCCTCACCATAACCAGCCCAATGAGCGTGTTATGTGA 1017 0.5762 MRPNQLPPPTGSASASNNRDRPQRRRKDNLTLPLPQRNAPLPMPLPLPPSSATSTSGPTYQLIPFSELDRISRIGSGSGGTVYKVVHRPTDRVYALKVIYGHHEDSVRRQIHREIQILRDVDDQNVVRCHDMYDHNGEIQVLLEFMDGGSLEGKHIPHEQQLADLARQILKGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPTASPEFRDFVSRCLQRDPSRRWSALKLLNHPFIAQGIPHHNQPNERVM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1468g00030 338 CDD PKc_MAPKK_plant_like 66 323 - -
Gabi1468g00030 338 SMART serkin_6 68 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1468g00030 338 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 36 325 - -
Gabi1468g00030 338 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Gabi1468g00030 338 MobiDBLite consensus disorder prediction 37 51 - -
Gabi1468g00030 338 Gene3D Phosphorylase Kinase; domain 1 51 147 - -
Gabi1468g00030 338 ProSiteProfiles Protein kinase domain profile. 68 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1468g00030 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Gabi1468g00030 338 FunFam Mitogen-activated protein kinase 2 148 335 - -
Gabi1468g00030 338 MobiDBLite consensus disorder prediction 1 57 - -
Gabi1468g00030 338 Gene3D Transferase(Phosphotransferase) domain 1 150 336 - -
Gabi1468g00030 338 Pfam Protein kinase domain 70 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1468g00030 338 SUPERFAMILY Protein kinase-like (PK-like) 66 329 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1468g00030 Gabi-Chr1468 136496 138609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1468g00030 1 332 MAP Kinase Kinase Gene Family AT1G51660 67.622 4.42e-165 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi1468g00030 Pkinase 4.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1468g00030 K13413 - gmx:100786390 547.74