Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1468g00028 ATGGGTATTGAGAACGAAATGAAGCAACCAAAAAAGGACATTATGTTCAGGTCAAAGCTTCCCGATATCTACATCCCAAAACACCTTCCCCTTCATTCATATTGCTTTGAGAACCTAGCAGAGTTGGGATCACGACCCTGTTTGATCAATGCCCCAACGGGGAAAATCTACACCTACTACGACGTGGAGCTCACCGCACGAAGAGTTGCCTCGGGTCTCAACAAATTGGGCATCCAACAAGGTGACGTGATCATGGTCCTGCTTCCCAATTGTCCAGAATTTGTGTTTGCTTTTCTTGGTGCCTCTTTTCGCGGTGCCATCACCACTGCTGCTAACCCTTTCTTCACCCCCGCTGAGATTGCTAAACAAGCAAAAGCTTCCAATGCCAAGTTGCTCATAACTCAAGCCTGTTACTATGAGAAAGTTAAGGATTTGGATGTGAAGCTCATGTTCGTGGACTCTCATCCGGAGGGGCATCTTCATTTTTCTGAGCTGGCTCATGCAGATGAGAATGAAATGGCTGAGGTAAAGATCAACCCTGATGATGTTGTGGCATTGCCTTATTCATCGGGGACAACAGGGTTGCCAAAAGGGGTGATGCTGACACACAAGGGTTTGGTTACTAGCATAGCACAACAGGTGGATGGGGACAACCCCAACCTTTACTTTCACACAGAGGATGTCATACTCTGTGTGCTTCCCTTGTTTCACATATATTCCCTCAACTCTGTTCTGCTTTGCGGCTTGAGGGCCAAAGCTGCTATTTTGTTAATGCCAAAGTTCGAGATTAATGGGTTGCTGGGTCTGGTTCAAAAATACAAAGTGTCAATTGCTCCAGTCGTGCCACCCATTGTTTTGGCCATTGCCAAGTCCACAGACCTTGATAACTATGACCTCTCCTCCATTAGGGTGTTGAAATCTGGAGGTGCTCCCCTTGGCAAAGAACTCGAACACACTCTCAGGGCCAAATTCCCCAAGGCCAAACTCGGACAGGGATACGGGATGACGGAGGCAGGTCCAGTGTTGACCATGTGCTTAACATTTGCTAAAGAGCCAATAGATGGAAAACCGGGTGCATGTGGAACCGTCGTCAGGAATGCAGAAATGAAGATTGTGGATCCCGAAACTGATAATTCTTTGCCCCGAAATCAACCTGGTGAAATTTGTATTAGAGGTGACCAAATCATGAAAGGTTATCTAAACGATCCGGAAGCTACTGAAAGAACTATAGACAAAGAAGGTTGGTTGCATTCGGGTGACATTGGGTACATCGACGAGGATGATGAGTTGTTCATCGTTGATAGGCTGAAGGAATTGATTAAATACAAAGGGTTCCAGGTGGCTCCTGCTGAACTCGAATCCCTTCTTCTTTCCCATCCTAGTATCTCCGATGTTGCTGTGGTCCCAATGAAGGATGAAGCAGCTGGTGAGGTCCCAGTTGCTTTTGTGGTGAGATCAAATGATCATATCGATACAACTGAGGATGAAATTAAGCAGTTCATCTCCAAACAGGTGGTGTTTTATAAAAGAATAAGCCGAGTATTCTTCATTGATGCCATTCCCAAGTCACCATCGGGCAAAATATTACGAAAGGATCTAAGGGCAAAGCTTGCAACAGGTGTTCCAAATTGA 1632 0.4577 MGIENEMKQPKKDIMFRSKLPDIYIPKHLPLHSYCFENLAELGSRPCLINAPTGKIYTYYDVELTARRVASGLNKLGIQQGDVIMVLLPNCPEFVFAFLGASFRGAITTAANPFFTPAEIAKQAKASNAKLLITQACYYEKVKDLDVKLMFVDSHPEGHLHFSELAHADENEMAEVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGDNPNLYFHTEDVILCVLPLFHIYSLNSVLLCGLRAKAAILLMPKFEINGLLGLVQKYKVSIAPVVPPIVLAIAKSTDLDNYDLSSIRVLKSGGAPLGKELEHTLRAKFPKAKLGQGYGMTEAGPVLTMCLTFAKEPIDGKPGACGTVVRNAEMKIVDPETDNSLPRNQPGEICIRGDQIMKGYLNDPEATERTIDKEGWLHSGDIGYIDEDDELFIVDRLKELIKYKGFQVAPAELESLLLSHPSISDVAVVPMKDEAAGEVPVAFVVRSNDHIDTTEDEIKQFISKQVVFYKRISRVFFIDAIPKSPSGKILRKDLRAKLATGVPN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1468g00028 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 437 - -
Gabi1468g00028 543 Gene3D - 9 436 IPR042099 -
Gabi1468g00028 543 Pfam AMP-binding enzyme 40 442 IPR000873 -
Gabi1468g00028 543 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Gabi1468g00028 543 SUPERFAMILY Acetyl-CoA synthetase-like 19 539 - -
Gabi1468g00028 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 535 - -
Gabi1468g00028 543 Pfam AMP-binding enzyme C-terminal domain 451 527 IPR025110 -
Gabi1468g00028 543 CDD 4CL 25 533 - -
Gabi1468g00028 543 FunFam 4-coumarate--CoA ligase 2 438 540 - -
Gabi1468g00028 543 Gene3D - 437 539 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1468g00028 Gabi-Chr1468 128445 132188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1468g00028 3 505 Monolignol Biosynthesis Gene Families AT1G51680 69.767 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1468g00028 K01904 - qsa:O6P43_027979 910.598