Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1464g00005 ATGTCGACGGTGTACGTTCTAGAACCCCCGACGAAGGGGAAGGTGGTGGTGAACACGACGCGCGGCCCTATCGACATTGAGCTCTGGCCCAAAGAGGCTCCCAAAGCCGTAAGGAACTTCGTGCAGCTATGCCTCGAAAGCTATTACGATAACACCATCTTCCACCGCATCATCAAGGACTTCCTCGTCCAGGGTGGCGACCCCACCGGCACCGGCACCGGTGGTGAAAGTATTTATGGGAGTGTTTTTGCTGATGAGTTTCATTCACGTCTAAAATTCAAGCACAGAGGTTTGGTTGCAATGGCCAATTCTGGATCACCGCATTCCAATGGAAGTCAGTTTTTCATAACTCTAGACCGTTGTGACTGGCTTGATCGGAAGAATACCATTTTTGGAAAGGTGACGGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAACGACCGGCCTTTAGATCCACCTCCAAAGATATTATCAGTTGAGGTATTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAACCTCAGATTAAAGCTACACCTGATACAGACAGTAAAGATTCAAAGAAGAAAGGTGTAAAAAAATTGAACTTGCTTTCTTTTGGGGAAGAAACTGAAGAAGAGGAAAAGGAATTGGCATTGGTGAAGCAAAAGATTAGGAGCAGTCACGATGTCTTGAATGATCCTCGTCTTCTAAAGGACGAAACTACTAATAATGAATTGAGTTCAGCTGACGGTACGTCAAGAAGGAATCTGCAGTTATCTGTAAGGGATGCGCTTAGCTCAAAGAAAGAAGAGCCTCAGAAAGATTCAGAAACTGGTAAATTTGGTCGTCTTGATTCCAGTGATGATGATGATGAAGCGAATTTTGATGCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGATATAGGTGATCTCCCTCCCAAGCCCAAGTTGCAAAATGGAAGGTCAAGCCCAGAGAACCATGATACGTCAGCAGCCAGGTCCAATGATGTAGGTGTTGATGAGGATCAACCAAGGGTGGAAAAATTGTCCTTGAAGAAAAAGGGGGTAGGATCTGAAGCAAGAGCTGAACGAATGGCTAGTGCAGATACAGATTTGCAGCTATTGAATGAAAGTGAGAGAGGAAGACAGTTGCGGAAGCAGAAGAAACGCAGAATTCAAGGGCGTGAAGATGAAGTTCTAGCCAAACTTGAAAAATTTACGAATGCTTTATCAGCAAAGGCGGCACCCACAACTGGTGAATCTGGAGATAATAATGGTGAGGAATTGTCTGACTGGAAACGTGCTAGCTTAAACTTTGCCCCCGATTCTGGCAAGGACCGCATGTCTCGCAAAGAGGACCCAAATGACTATGTTGTGCATGACCCTCTCTTGGAAAAGGGAAAAGAGAAATTCAATAGGATGCAAGCCAAACAAAAGAGACGAGAACGTGAGTGGGCTGGGAGATCTCTTACTTGA 1494 0.4458 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLESYYDNTIFHRIIKDFLVQGGDPTGTGTGGESIYGSVFADEFHSRLKFKHRGLVAMANSGSPHSNGSQFFITLDRCDWLDRKNTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPPKILSVEVLWNPFEDIVPRTLQKPQIKATPDTDSKDSKKKGVKKLNLLSFGEETEEEEKELALVKQKIRSSHDVLNDPRLLKDETTNNELSSADGTSRRNLQLSVRDALSSKKEEPQKDSETGKFGRLDSSDDDDEANFDARMRMQILKKRKDIGDLPPKPKLQNGRSSPENHDTSAARSNDVGVDEDQPRVEKLSLKKKGVGSEARAERMASADTDLQLLNESERGRQLRKQKKRRIQGREDEVLAKLEKFTNALSAKAAPTTGESGDNNGEELSDWKRASLNFAPDSGKDRMSRKEDPNDYVVHDPLLEKGKEKFNRMQAKQKRREREWAGRSLT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 239 497 - -
Gabi1464g00005 497 Gene3D - 2 183 IPR029000 -
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 181 200 - -
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 450 497 - -
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 268 318 - -
Gabi1464g00005 497 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 325 339 - -
Gabi1464g00005 497 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 219 IPR044666 -
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 245 267 - -
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 417 431 - -
Gabi1464g00005 497 CDD cyclophilin_CeCYP16-like 8 180 - -
Gabi1464g00005 497 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Gabi1464g00005 497 SUPERFAMILY Cyclophilin-like 14 181 IPR029000 -
Gabi1464g00005 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Gabi1464g00005 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Gabi1464g00005 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Gabi1464g00005 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Gabi1464g00005 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Gabi1464g00005 497 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
Gabi1464g00005 497 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Gabi1464g00005 497 MobiDBLite consensus disorder prediction 340 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1464g00005 Gabi-Chr1464 28791 36393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1464g00005 9 173 U-box Gene Family AT5G67530 47.879 5.57e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1464g00005 K12737 - gmx:100793148 795.038