Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1462g00010 ATGGCTTTGAGTTCTGAATCATACAAGTGGAAGTATGATGTATTCTTGAGCTTCAGAGGGTATGATACCCGCAGGAGTTTTACTAGCCATCTCTATCATGCACTATGCCAAAAGGGAGTTAACACTTTCATAGACTACAAGGAGCTCAAGAGGGGAGAGAAGATTTCACCTTCACTTTTTAGAGCTATTGAAGATTCAAGGATCTCAGTTGTCATATTATCTAAAAAATATGCTTCTTCCACTTCTTGCTTAGATGAACTCCTTAAGATCCTCGAGTGTAAGGATTCCAAGGGTCAGCTGGTTTTGCCTGTCTTTTATGCAGTGAATCCATCTCAAGTAAGAGAACAACAGGGAAGTTTTGAAGAAGATTTGGCCAAACAAGAAGAAAAGTTTTGGGATGACATGGACAAGGTGAAAAGATGGAGGGCAGCTCTATGTGAAGTATCTACTTTGTCTGGGTGGCACCTAGGAGATGGGCAGGAATCTAAGTTTGTTCAGAGAATTGTTGAAGAGATATTGAGTAAGCTGAACCGCACACCTTTCAGTGTTGCTAAGCATCCTGTTGGACTGGATTCGCCTATAGAAGATATTAAGTCACTTTTGAAAACTGGATTAGATGATGTGCGGGCTATAGGAATTTACGGAACTGGAGGAATTGATGATGTTGATTCATTGGAGCAACTGGAATCATTGGTTGGAGAAAACAGTTGGTTTGGATCAGGAACTAGAATCATCATAACAACTAGAGATAAGCATTTGCTAATTGCTCACAAAGTGGAAACAGCCTACAAAGTCAAGGAATTAAGTCATGGTCATGCTCTTGAACTGTTTAGTTGGTTTGCTTTCAAAAGACCCTGTCCTTCAACAGATTATGAGGAGTTGTCCTTCCATATGCTAAACTATGCCAAGGGTCTGCCATTGGCACTAACAGTTTTGGGGTCTTACCTGTGTGGTAGAGATAAAGTAGAATGGAAAAGTGCATTAGCTAAACTGAAAAAAATTCCAGATAGACAGATTTATGAAATGCTTAAAATCAGCTTTGATGGGTTGGAGGAGAATGAAAAGGCCATTTTTCTGGATATTGCATGTTTCTTTAAGGGAGAGGACAAACATTATGTGAAAATGATACTAGACGGTTGTGACATGCACACAGATATTGGGATCAGAGTTCTAATGGATAAGTCTCTCATTGCTGTAGAACTGAACAAGCTTTGGATGCATGACTTGCTACATGAAATGGCTAAAGAAATTGTTCGCTGTGAATCCCCTAAAGAGCCCGGTAAACGCAGCAGACTTTGGTTTCATGAGGATGTTCTTCATGTATTCAACCAAAATACGGGAACTGACAACATTGAAGGAATAAGGCTAGATCTACCTGAACCACATAAGGTTAACATAAATGGCAAAGCCTTGGCAAATATGAAAAGACTTAGACTTCTTATGATCAATAATGCAGATGTTTCAGATGATATTCAATATCTATCTAATGAGCTAAGATTGATTGATTGGCCGGGATACCCTTCTTCAACTCTACCACCAGACTTCCATCCAAAGAGGCTTGTTTCTCTAAATATGAGTCATGGTCGCATCAAACACTTGTGGAAGGGAGCTAAGATATTCAGAGACTTGAAACTTGTCTCCTTTAGCTGCTGTGAATACCTCACTGAAATCCCGGACTTCTCTATGGTTCCAAACCTTGAGAGTCTCAACCTAGACCATTGTAAAAGTTTAGTTAAGGTGCATGAGTCCGTGGGATATCTTGATAAGCTTGTTACTTTAAACTTTCTATTATGCTCCAATCTCAAGACTTTTCCAAGTAGATTCAAATTGAAATCTCTACGTACTCTTCTCCTTACTGGCTGCTCAAATCTTAGAAAGTTTCCTGAGGTTGTTGAGAAAATGGAACATCTTGAAGAAATCCTTCTCCAAGGGACTGCAATAAAAGAACTACCACAGTCAATTGAATATCTAATTGGGCTAAAAGTCTTACTCTTGGATTCATGCAAAAAGCTTGAGCACTTCCCTAGTAGCCTTCAGAATTTGCAATACCTTACTGGACTTGTTCTCACTGATTGCTCTAAGCTCCAGGAGCTTCCAAAGCTTCCACTAAATATAAGATTTATAGATACAAGTAATTGCAGATCATTGTCCAGCCCATCAAATTTTAGTGTAGAGGACTTTCCAAGGTTTTCTCATATGTGTGTACTCATTCTTTCAGAAAAATATATTCAGGAACTAAAATTAATTTTCATGCTTCAGGAATCTATTGATGAAGTTATGCTTCCAGGGAGCAAGATCCCTGATTGGTTTCATCATCAGAGTACTAATGGTTCAATTTCTATTGAGGTAGCTTCAAGGTTATACGGTAAGCACGTGGAGTTGTTTTTTGGTGCAGTTTTTGAGTTGGAAAAAGGTGCTACTACAACCGGTATGTTTTCATGTGTATATGAGGTTATCATCAATGATCGAAAGACACTTGCCATAGCAAGAAATTTTGAATCACTGGACTCAAGTCATGTGTGGCTAACTAGGATCAAATTTGGTCGTTTGATGTTGCGCCTAAACAGTATGCATTATTGGAATCACTTCAGGATTTCATTTGGGATCTCTGAAGTATCATCAAATGTGAAAGTAAAAGCATCCCTGAAAAGTTGTGGTTTCCATATTTTGTGCAAGCAAGAAGGGTGTGTTACTGATCATGAAACTGTTAGGAAGTAG 2718 0.3885 MALSSESYKWKYDVFLSFRGYDTRRSFTSHLYHALCQKGVNTFIDYKELKRGEKISPSLFRAIEDSRISVVILSKKYASSTSCLDELLKILECKDSKGQLVLPVFYAVNPSQVREQQGSFEEDLAKQEEKFWDDMDKVKRWRAALCEVSTLSGWHLGDGQESKFVQRIVEEILSKLNRTPFSVAKHPVGLDSPIEDIKSLLKTGLDDVRAIGIYGTGGIDDVDSLEQLESLVGENSWFGSGTRIIITTRDKHLLIAHKVETAYKVKELSHGHALELFSWFAFKRPCPSTDYEELSFHMLNYAKGLPLALTVLGSYLCGRDKVEWKSALAKLKKIPDRQIYEMLKISFDGLEENEKAIFLDIACFFKGEDKHYVKMILDGCDMHTDIGIRVLMDKSLIAVELNKLWMHDLLHEMAKEIVRCESPKEPGKRSRLWFHEDVLHVFNQNTGTDNIEGIRLDLPEPHKVNINGKALANMKRLRLLMINNADVSDDIQYLSNELRLIDWPGYPSSTLPPDFHPKRLVSLNMSHGRIKHLWKGAKIFRDLKLVSFSCCEYLTEIPDFSMVPNLESLNLDHCKSLVKVHESVGYLDKLVTLNFLLCSNLKTFPSRFKLKSLRTLLLTGCSNLRKFPEVVEKMEHLEEILLQGTAIKELPQSIEYLIGLKVLLLDSCKKLEHFPSSLQNLQYLTGLVLTDCSKLQELPKLPLNIRFIDTSNCRSLSSPSNFSVEDFPRFSHMCVLILSEKYIQELKLIFMLQESIDEVMLPGSKIPDWFHHQSTNGSISIEVASRLYGKHVELFFGAVFELEKGATTTGMFSCVYEVIINDRKTLAIARNFESLDSSHVWLTRIKFGRLMLRLNSMHYWNHFRISFGISEVSSNVKVKASLKSCGFHILCKQEGCVTDHETVRK 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1462g00010 905 Pfam NB-ARC domain 219 333 IPR002182 GO:0043531
Gabi1462g00010 905 SMART till_3 11 151 IPR000157 GO:0007165
Gabi1462g00010 905 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Gabi1462g00010 905 SUPERFAMILY "Winged helix" DNA-binding domain 338 442 IPR036390 -
Gabi1462g00010 905 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Gabi1462g00010 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 361 IPR027417 -
Gabi1462g00010 905 Gene3D Ribonuclease Inhibitor 454 608 IPR032675 -
Gabi1462g00010 905 Gene3D Ribonuclease Inhibitor 609 752 IPR032675 -
Gabi1462g00010 905 Pfam TIR domain 11 182 IPR000157 GO:0007165
Gabi1462g00010 905 Pfam C-JID domain 761 894 IPR045344 -
Gabi1462g00010 905 SUPERFAMILY L domain-like 422 751 - -
Gabi1462g00010 905 Gene3D - 267 351 IPR042197 -
Gabi1462g00010 905 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Gabi1462g00010 905 Gene3D - 5 184 IPR035897 -
Gabi1462g00010 905 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 220 713 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1462g00010 Gabi-Chr1462 127489 135635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1462g00010 194 723 WRKY Transcription Factor Family AT4G12020 35.572 2.27e-79 280