Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1458g00002 ATGGCTGCCACAGCTTCTGCAGGCATAGCTTCTTTGTTTTCTTCTTCTATCAACACTGTCAAATGTCTCCGTACCAAGAACTGCTTCATAGATCCTCACATTTCCATATCCTCTAAACTCATATTATCATCTGTGGAACCTTTGTCCATTGGTACTACCATTTCACACAAATTGTGGGTGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGCTAGTGGATGCTGAAGAGGATGCTGATGCTGGTTTGGTTGAAGAGAAGGACAAGGAAGTGGAAATAGGAGCAGAAGGAGACACTGAATCCTCTGTCAGCACTAAGCTTTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAACTTGCAGGGTTAATTGAGGAATATGGTAGTGCAGAACTAATTGAGGTTCTTTATGACAAGGATACTGGAAGAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTAATAGAAAATCTTGATGGAAGAGAGTTCTTGGGCCGAACCTTGCGGGTTAACTTCTCTAACAAACCTAAACCAAAAGAGCCCTTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTTCTGAGAGTCTAATACAAGCCTTTCAAGAATATGGAACTGTTGTTGGGGCTAGGGTCTTATATGATGGCGAAACCGGAAGGTCACGTGGCTATGGCTTCGTTTGCTATTCAACAAGATCAGAGATGGAATCTGCCCTTGTATCCTTGAATAATGTGGAACTAGAAGGACGCGCAATGCGTGTAAGCTTGGCTGAAGGGAAACGTTCACAAGGTTAA 843 0.4235 MAATASAGIASLFSSSINTVKCLRTKNCFIDPHISISSKLILSSVEPLSIGTTISHKLWVPRISAAVAQEEVLVDAEEDADAGLVEEKDKEVEIGAEGDTESSVSTKLYFGNLPYSVDSSQLAGLIEEYGSAELIEVLYDKDTGRSRGFAFVTMSCIEDCNAVIENLDGREFLGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTSESLIQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTRSEMESALVSLNNVELEGRAMRVSLAEGKRSQG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1458g00002 280 Gene3D - 66 186 IPR012677 -
Gabi1458g00002 280 Gene3D - 187 280 IPR012677 -
Gabi1458g00002 280 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gabi1458g00002 280 SMART rrm1_1 198 271 IPR000504 GO:0003723
Gabi1458g00002 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gabi1458g00002 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Gabi1458g00002 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Gabi1458g00002 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Gabi1458g00002 280 FunFam 31 kDa ribonucleoprotein, chloroplastic 68 187 - -
Gabi1458g00002 280 CDD RRM2_NsCP33_like 198 273 - -
Gabi1458g00002 280 SUPERFAMILY RNA-binding domain, RBD 192 277 IPR035979 GO:0003676
Gabi1458g00002 280 SUPERFAMILY RNA-binding domain, RBD 101 190 IPR035979 GO:0003676
Gabi1458g00002 280 PANTHER OS02G0815200 PROTEIN 52 277 - -
Gabi1458g00002 280 FunFam 28 kDa ribonucleoprotein, chloroplastic 188 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1458g00002 Gabi-Chr1458 11691 14336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1458g00002 88 276 Eukaryotic Initiation Factors Gene Family AT3G16380 31.731 8.33e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1458g00002 - - aprc:113871254 412.149