LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1454g00007	ATGATGGCAAGGCAAGAATCATTGTTGTCCTCTTCCTCCTTTAGCTATGATGTGTTTTTAAACTTCAGAGGCGTAGATACTCGTCACGGTTTCACTGCCAATCTCTACAAAGCTCTTGATGACAGGGGAATCCACACCTTTATTGATAATGAAGAGCTTCAAAAAGGAGAGGAAATCACACCATCACTTGTCAAGGCTATTGAGGAATCCAGGATTGCCATCATTGTGCTCTCTACCAACTATGCTTCTTCTTCATTTTCCTTAGATGAACTTGTCCACATTCTTCACTGCATCAAGCAAAAGGGTCGGTCGGTTTTGCCAGTTTTCTATGACGTTGACCCTTCTGATGTGCGATATCAGACAGGTAGCTATGAAGAAGCACTCGCTACTCTTGAAAAGTGGTTTAAGGATGACAGGTTGCAAAAATGGAGGGAGGCTCTGCGTCAAACGGCTGGCTTGTGTGGCTTTACTTTCAAACAACAAGGGAATAGGAACGAACATGAGCTTATTGAGAAGATTGTTAAAGTGGTCTCCAACAAGATTAATCGGGCTCCTTTACATGTTGCGGATTATACAGTTGGATTGGAGTCTAAAGTGCAAGATGTAATCTCTCTTCTCAATTTTGGATCTGATGAAGTCCACATGATAGGGATCCATGGATTTGGGGGAGTAGGAAAGACGACACTTGCTCTATCAGTTTTTAACTCTGTTGCTGAATATTTTGAGGGTTTATGTTTTCTTCAAAATGTGAGAGAAATTTCAAACACACATGGGTTACTTCATCTCCAAGAGACCCTTCTTTTGAAAACAGTCGGGAAGGATATTAAGTTTGCAGGTGTCAATGAAGGAATGGCAACAATAGAGCATAGGCTCAAGCGGAGGAAGATTCTTTTAGTTCTTGATGATGTTGACAAGCTAAAGCAATTGCAAGCTACTTGTGGAAAGCCTGATTGGTTTGGTTCTGGTAGCAGAATCATCATTACAACTCGGGACAAGGATTTGCTAACAAGTCATGAGGTTAAAAGAACATATGAGGTTGATTTGTTGAATAATAAAGAAGCTCTTGAATTGCTCTGTTGTTATGCTTTTAAAACTGAAAAAGTTGATCCACAGTATGGGCACATTTTAAACCGTGCAGTAACTTATGCTTCTGGACTTCCATTGGCTTTGGAGGTAATAGGTTCCGACTTATTTGTAAGAAGGAAAGAAGAATGGGAATCTACGTTAGATCAGTATGAAATAATTCCTAATGACGAGATCCAGAACATACTTAAAGTAAGTTTTGATTCTTTGAAGGAAAATCAGAAAAAAATATTTCTTGATATTGCTTGTTTCTTCAATGGATATGCTTTGGCATATGTCAAAAAAATACTTCATGCTCATCATGGTTTCCTTCCGGATGATGGTATTGGAGTGTTGATTGCAAAATCTCTCATAAAGATTGATGCGTATGATCATGTAACATTGCATGACCTGATAGAGGACATGGGTAAAGAGATTGTCCGACTGGAAGCACCAAATGAGCCTAGCAAGCGTAGTAGGTTATGGTTCCACGAAGATATACTTCAAGTTCTTGAAGAAAATACGGAAAGTGGTGTAATTCAAATCATGATTCTGGACTTCCCTGAATTTAAAGTAGTAGAATGGGATGGAAACGGCTTCAAGGATATGAAAAAACTCAAAACACTTATTATAAGAAATGCTGGTTTTTTTGAAGGTCCCAAACATCTTCCAAATAGTTTGAGAGTACTGGAATGGTGGGGATATCCTTCAACATCTTTACCATCCGATTTTAATCAAAAGAATCTTGCGATACTGGAGTTACCCCAAAGTCCCTTACTGTCAATTGATTCACTCATGTCAAAGAAGAGGAAGTTTGATAGTATGAAAGTTTTGAAGTTTGATGGTTGTCAATGTATAACAAAAATACCTGATGTGTCTGGTGTCCCAAATTTAGAAAAATTATCATTTGGACATTGTGACAATTTAATCAAAATTCACGAATCGGTTGGATTCCTGAATAAACTCAAAATCTTGAACGCTAGTGGTTGCAAGAAGTTTAGCAGTTTTCCACCCATCGAGTTGCCCTCACTTGAAGAACTTAATCTTTCATTTTGTCCTAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAAAATAACACAGCTTGATATCACTAACACTCTCATAAAAGAACTGCCATTTTCAATTGAAAACCTCACTCGGCTTCAAGAACTAGTGCTGAATCTTTGTGGAGGATTTGTTCGGTTACCAAGGAGCATTTCGATGATGCCAGAACTTAATCTATTGATTGTTATGAACTGTGAGAATTTTCGGGAAATTGAAGGGATTCCACCCAACTTAAAAGAATTCGTTGTATGGAAGTGCACATCCTTGAAAGATTTAGACCTCACACTATTTCCCGAATGTTTGACGAAACTTGTCTTACATAATTGCGAGAATCTTCAAGAAATCAGAGGGATTTCACCCAACATAAGAATTTTAAATGCAAGAGAATGCACATCCTTGACTTCCGAGTGTACAAGCATGTTACTGAATCAGGAATTGCACGAGGAGGGTGGAGACAAAGTGTTTTTCTTGCCAGGATCAAGCATTCCAGAGTGGTTTGAGCATCGTCTCGTTGAAGAGTCAATTTCTTTCCGGTTTCGTAACATGATCCCTTCTATATCTGTATCTTTTGCTTTTCTTTTCAATGGACAATATCCCACTTATTATAGTCTTGATATTGAAGTCAACGGCATTCCAAAAGTTATAAAAGAGGATTTCAATTTTTATTGCGAAGAAGGGGATTATACAGTTCTTTATGATATAAAACCGGAAACATTCTTACGTCATGATGTTCTATTTCTAGAAGAAAATATCTGGAATTATGTGAAGTGTACTCTATCATGCAATAGAGACGGAGGGTTTCTCAGAGAAAGTGGAATCCATGTATTCAAACAAGGAAGGAGCATGGAGGACATTGAATTCACCGATCAGCAAGGCTTGGCAGATTCTCAGACACGGCAAATGATTTTGAAAAGGGCAGCGAGGTCTTTAAGATTGAGATCCTGGGAAGAACACGGCTGTGAAATTGTGTCAAGAAAGAGGAAAATAGGTGTGTTAAATGTGGACTTGGACAATGAAGCCTGGGAACCTTGTTGTCCTGCACCTTCAAAAGTGGCTTTGAATTCAGCAGTGTCAAACTTTGCTACTGGTGCTGCCAGGGAAGAAGGAGAATCATCTCAAAATAATTTGGCTTTGTTGCCTTTATTGGAACCGCAATTGGGACAGGTCACAGAGTGGCTTTCATTGCTTCCACCTCCAGCATCGAACAATTATGTGAATTCGCATTCAAATTCAATGGTATCAAAACTGAGAAGTAGCGCTCCCAATTTCCATGTATTCCTTTAG	3420	0.3868	MMARQESLLSSSSFSYDVFLNFRGVDTRHGFTANLYKALDDRGIHTFIDNEELQKGEEITPSLVKAIEESRIAIIVLSTNYASSSFSLDELVHILHCIKQKGRSVLPVFYDVDPSDVRYQTGSYEEALATLEKWFKDDRLQKWREALRQTAGLCGFTFKQQGNRNEHELIEKIVKVVSNKINRAPLHVADYTVGLESKVQDVISLLNFGSDEVHMIGIHGFGGVGKTTLALSVFNSVAEYFEGLCFLQNVREISNTHGLLHLQETLLLKTVGKDIKFAGVNEGMATIEHRLKRRKILLVLDDVDKLKQLQATCGKPDWFGSGSRIIITTRDKDLLTSHEVKRTYEVDLLNNKEALELLCCYAFKTEKVDPQYGHILNRAVTYASGLPLALEVIGSDLFVRRKEEWESTLDQYEIIPNDEIQNILKVSFDSLKENQKKIFLDIACFFNGYALAYVKKILHAHHGFLPDDGIGVLIAKSLIKIDAYDHVTLHDLIEDMGKEIVRLEAPNEPSKRSRLWFHEDILQVLEENTESGVIQIMILDFPEFKVVEWDGNGFKDMKKLKTLIIRNAGFFEGPKHLPNSLRVLEWWGYPSTSLPSDFNQKNLAILELPQSPLLSIDSLMSKKRKFDSMKVLKFDGCQCITKIPDVSGVPNLEKLSFGHCDNLIKIHESVGFLNKLKILNASGCKKFSSFPPIELPSLEELNLSFCPSLENFPEILGKMEKITQLDITNTLIKELPFSIENLTRLQELVLNLCGGFVRLPRSISMMPELNLLIVMNCENFREIEGIPPNLKEFVVWKCTSLKDLDLTLFPECLTKLVLHNCENLQEIRGISPNIRILNARECTSLTSECTSMLLNQELHEEGGDKVFFLPGSSIPEWFEHRLVEESISFRFRNMIPSISVSFAFLFNGQYPTYYSLDIEVNGIPKVIKEDFNFYCEEGDYTVLYDIKPETFLRHDVLFLEENIWNYVKCTLSCNRDGGFLRESGIHVFKQGRSMEDIEFTDQQGLADSQTRQMILKRAARSLRLRSWEEHGCEIVSRKRKIGVLNVDLDNEAWEPCCPAPSKVALNSAVSNFATGAAREEGESSQNNLALLPLLEPQLGQVTEWLSLLPPPASNNYVNSHSNSMVSKLRSSAPNFHVFL	1139

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1454g00007	1139	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	442	IPR027417	-
	Gabi1454g00007	1139	Gene3D	-	348	432	IPR042197	-
	Gabi1454g00007	1139	SMART	till_3	15	153	IPR000157	GO:0007165
	Gabi1454g00007	1139	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	828	IPR044974	GO:0006952
	Gabi1454g00007	1139	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	183	-	-
	Gabi1454g00007	1139	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	155	IPR035897	-
	Gabi1454g00007	1139	Gene3D	-	13	181	IPR035897	-
	Gabi1454g00007	1139	SUPERFAMILY	L domain-like	534	847	-	-
	Gabi1454g00007	1139	Gene3D	Ribonuclease Inhibitor	695	857	IPR032675	-
	Gabi1454g00007	1139	Gene3D	Ribonuclease Inhibitor	521	694	IPR032675	-
	Gabi1454g00007	1139	SUPERFAMILY	"Winged helix" DNA-binding domain	418	526	IPR036390	-
	Gabi1454g00007	1139	Pfam	NB-ARC domain	197	413	IPR002182	GO:0043531
	Gabi1454g00007	1139	Pfam	TIR domain	16	184	IPR000157	GO:0007165
	Gabi1454g00007	1139	Gene3D	-	182	346	IPR027417	-
	Gabi1454g00007	1139	ProSiteProfiles	TIR domain profile.	14	181	IPR000157	GO:0007165
	Gabi1454g00007	1139	PRINTS	Disease resistance protein signature	290	304	-	-
	Gabi1454g00007	1139	PRINTS	Disease resistance protein signature	693	709	-	-
	Gabi1454g00007	1139	PRINTS	Disease resistance protein signature	383	397	-	-
	Gabi1454g00007	1139	PRINTS	Disease resistance protein signature	215	230	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1454g00007	Gabi-Chr1454	219451	226322	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1454g00007	11	852	WRKY Transcription Factor Family	AT4G12020	29.114	5.47e-84	299

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1454g00007	-		-	gmx:100780257	1009.21