Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1454g00006 ATGGCAAATTTTGAAAATGATAAGCTTCCGATGCTGTCAGACACAGATTCACAACCATATTATGAACCCTCGGGTTCTAAATTCAAAAAGCTTCTATCCAGGACAAAAAGTGCACAAATTTCTATTCCTATGAGCTCCTTGGAGTCATATGAGAGAGAAACTGGTCACGTGGGACATACTGGTCCTCTTTGGAGTGAGAGAAAAAATCCCTATATGCAGATGAGTGGTCCACTATATGCTACCACTGGAAATGGAAATCTTTTGCAGCAGAGTTCAGTTGTAGCAGGAAACAAAGCAGAGGAGAGAAAGACAGAAAATGTTGCTACGTTCCATGGCACAGGTTCAAACTACTGGAATAATAACTATGATACAAAAAATGAACACTTAATGAGGTCTGGACAACTGGGAATTTGTGATGATCCTTATTGTACTACTTGCCCTACTTCCTTCAAGGCTTCTCAGCTAAGAAATCCAAAACCTTCAACTAAATTTGATCCCAAGTTCCACAATGCTCTATACGGGGATGCAAAGGGTTTTGCAAGAAAATTCTTTTCTTTCTGCTCTTCTTTTGGTCCTGGAGTTATGAACCCTCACACTAAATTTGTACAACATTGGAACAAGGGTTTGGCCATTTTTTGCTTGGTTGCTATTTTTGTGGATCCATTATTTTTCTTCTTACTCTATGTGCAGCAGGATTATAATTGTATTGTTATCAACTGGAATTTGACAAAAGCACTTGTCATAGTTAGAAGCTTGAATGATTTTATATATTTCTTTAACATTCTTCTCCAGTTTAGGTTGGCTTACGTTTCTCCTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCAACCAAAGCAAATTGCTCTTCATTACCTGAAGGGTTATTTTCTTATTGACTTGTTTATTGTATTTCCTCTTCCTCAGATAATGTTATTGCTTGTACTACCAAAATCCTTGGGAGGAGCAAATTATGCTAAGAATCTTCTGCGTGCAGCAATCCTAGTGCAATATATTCCCAGACTATTCAGGTTTCTTCCTCTACTAATTGGCCAGTCTCCAACAGGATTCATATTTGAGTCAGCATGGGCAAATTTCGTTATAAATCTTCTCATTTTCATACTAGCTGGCCATGTTGTAGGCTCTTGCTGGTACCTCTTTGCTCTACAGAGGGTTAATCAATGTTTGAGAAATGCATGCCATAGTTCTACTATACCTGGATGCCTGAACCTCATTGATTGCGGACATGGTTATCATGGAAACAATCAGCCTGGCCTAACATCAGAGCAGTGGAACAATAATACAGATGCTATTGCTTGTTGGAATTACCCTTCCAATGGTACTTTTGTATATGGGATCTATGCCAATGCTGTACCTCTTACTATACGAACAGACATGGTGGCCAAATACGTGTATTCTCTATTTTGGGGGTTCCTGCAAATCAGTACTCTGGCTGGTAATCTATTGCCTAGCAATTTTGTGTGGGAAGTGCTTTTTACTATAGCCATCACGGCATTAGGACTCTTGCTTTTTGCACTTCTCATTGGAAACGTACAGAACTTTCTTCAAGGTCTTGGACGGAGGAGTCAAGAAATGCAACTTAGAAGCCGCGATTTTGAGCGATGGATGAGCCATCGTCGCTTATCAGAAAATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATACTTGGGCTGCAACAAGGGGAGTAAATGAAGAAATGCTTATGGAGAATTTGTCAGAAGATCTCCAGAGAGATATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTTCACTGATGGATGAGCCTATCTTGGATGCCATTTGTGAGAGACTAAGACAAACGACATACATCCAAGGAAGCAGAATTCTGAGTCTTGGTGGTCTGGTAGAGAAGATGGTATTTGTGGTACGTGGGAAAATGGAGAGCATAGGAGAAGATGGAACTAGAGTTCCCTTATCAGAAGGTGATGCATGTGGAGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAAAGGTTGCTTAGCAGCAGGACAGTAAGGTGCTTAACAAATGTGGAGGCCCTTTCACTCAGAGCTGCAGACCTTGAAGAAATCACAATCCTTTTCACAAGATTCTTGAGGAATCCACGTGTTCAAGGAGCCATAAGGTATGAATCACATTATTGGAGATCCCTAGCGGCAACCAGGATTCAGGTTGCATGGAGATACAGGAATAAACGTCTAAATCGTGCTGATTCCTCACTATCAGATTAA 2310 0.4039 MANFENDKLPMLSDTDSQPYYEPSGSKFKKLLSRTKSAQISIPMSSLESYERETGHVGHTGPLWSERKNPYMQMSGPLYATTGNGNLLQQSSVVAGNKAEERKTENVATFHGTGSNYWNNNYDTKNEHLMRSGQLGICDDPYCTTCPTSFKASQLRNPKPSTKFDPKFHNALYGDAKGFARKFFSFCSSFGPGVMNPHTKFVQHWNKGLAIFCLVAIFVDPLFFFLLYVQQDYNCIVINWNLTKALVIVRSLNDFIYFFNILLQFRLAYVSPESRVVGAGDLVDQPKQIALHYLKGYFLIDLFIVFPLPQIMLLLVLPKSLGGANYAKNLLRAAILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFVINLLIFILAGHVVGSCWYLFALQRVNQCLRNACHSSTIPGCLNLIDCGHGYHGNNQPGLTSEQWNNNTDAIACWNYPSNGTFVYGIYANAVPLTIRTDMVAKYVYSLFWGFLQISTLAGNLLPSNFVWEVLFTIAITALGLLLFALLIGNVQNFLQGLGRRSQEMQLRSRDFERWMSHRRLSENLRRRVRQAERYTWAATRGVNEEMLMENLSEDLQRDIRRHLFKFVKKVRIFSLMDEPILDAICERLRQTTYIQGSRILSLGGLVEKMVFVVRGKMESIGEDGTRVPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLLSSRTVRCLTNVEALSLRAADLEEITILFTRFLRNPRVQGAIRYESHYWRSLAATRIQVAWRYRNKRLNRADSSLSD 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1454g00006 769 ProSiteProfiles cAMP/cGMP binding motif profile. 601 669 IPR000595 -
Gabi1454g00006 769 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1454g00006 769 CDD CAP_ED 601 717 IPR000595 -
Gabi1454g00006 769 SUPERFAMILY cAMP-binding domain-like 529 721 IPR018490 -
Gabi1454g00006 769 Gene3D Helix hairpin bin 529 593 - -
Gabi1454g00006 769 Gene3D - 206 525 - -
Gabi1454g00006 769 SUPERFAMILY Voltage-gated potassium channels 197 524 - -
Gabi1454g00006 769 Gene3D Jelly Rolls 599 723 IPR014710 -
Gabi1454g00006 769 Pfam Ion transport protein 209 530 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1454g00006 769 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1454g00006 Gabi-Chr1454 200300 208114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1454g00006 5 679 Ion Channels AT3G17700 59.677 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1454g00006 K05391 - gmx:100781973 1243.41