Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1454g00005 ATGGCTAATTTTGAAGGCATTGAGCTGCCGGTGCTGTCAGAGACAGATGAAGAATCATATGATGCACCCCTGGATTCTAAATTCAGAAGTTTCGCATCCAAGACAAAAAGTGCATCATTTTCTATTCCTATGAGCTCCTTGGAGTCATATGGGAGAGAAACTAGTCTTGTGGGACATACTGGTCCACTTTTGAGAGAGAGAAAAACTCCTTTTATGCAGATGAGTGGTCCACTATATGATAACCGTGGAACTGGAAATATTTTGCAACAGAGAATAGCTGTAACAGGAGAAAAAGAAGAAGAGAGCAAGACAGAAAATTTTTCTACTTTCCGTAGCATAGGTTCAAGTTACTGGAACAACAACTATAATGATAAGAATGAACACTTAATGAGGTCAGGGCGACTAGGAATGTGTAATGATCCTTATTGTACTATTTGCCCCACTTACTTCAACCCTTCTAAGCCAAGAAATCCAAAAGTTTCCACTACATTTGATCCCAAGTTCCGCAATGTTCTTTACGGCGATGCCAAAGGTTTTGCAAGAAAACTTTTTTCTTTCTGCTCTTCATGTGTTCCTGGAGTTATGAACCCTCACACAAAATTCGTACAAAAATGGAACAAGATTTTGGCTATTTGTTGCTTGGTGGCAATTTTTGTGGATCCTTTATTTTTCTTTGTACTCTATGTGGAGCAGGATTATAATTGTATTGTTATCAACTGGAGATTGACAATAGCACTTGCTATTCTTAGAAGCATGAATGATTTTGTATATTTCTGTAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCGAGAGTGGTTGGTGCTGGAGATTTAGTTGACCAACCTAAGAAAATTGCTCTTAATTACTTGAAGAGTTATTTTCTTTTTGACTTATTTGTTGTAGTTCCTCTACCTCAGATAATGATATTGGTTGTCTTGCCAAATTCCTTGGGGGGAGCAAATTCTGCTAAGAATCTTCTGCGAGCATCAATCCTGGTGCAATATATTCCCAGATTATTCAGGTTTCTGCCACTGCTAATTGGCCAGTCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTCACAATAAATCTTCTCATTTTTATGCTATTTGGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTTTGCGAGATGCGTGCCGTAATTCTAATATACCTGGATGCCTGAAATTGATTGATTGTGGGCGTGGCTATGATGGAAACAATCAAGCTGGCCTAACATCAGCTCAATGGAACAACAACACAGATGCCATTAATTGTTTGAATCCCACTACCAGTAGTGGTTTCCCTTCCACTGGTGGTGATTTTAATTATGGGATCTATTTTCCTGCTGTACAACTTATTACAGAAAATAATGTGATCAACAAATACGTGTTTTCTTTGTTTTGGGGATTCCAGCAAATCAGTGTTTTTGCTGGTAATATGGTCCCTAGCTATTTTGTGGGGGAAGTCCTTTTTACTATTGCCATCATAGGATTGGGACTCTTACTTTTAGCTCTTCTCATTGGGAACTTTCAGAACTTTATTCAGTCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGCAAGTGATGTTGAGCAATGGATGAGCCATAGGCGCTTACCAGGAGAACTAAGAAGGAGAGTACGACTGGCTGAACGGTATAATTGGGCTGCAACAAGAGGTGTGAATGAAGAAATGCTTCTTGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAGCTTTGTTAAGAAAGTTCGAGTTTTTGCCATGATGGATGAGCCTATCTTGGATTCCATTTGTGAGAGACTAAGACAAAAGACATACATCAAAGGGAGTATGATTTTGCGTCAAGGTGGTCTGGTAGAGAATATGATATTTGTGGTGCGTGGGAAATTGGAGAGCATAGGAGAAGATGGAACTAGAGTTCCCTTATCAGAAGGAGATGCTTGTGGTGAAGAACTTCTGAGATGGTATCTTGAACATTCTTCAGTCAGCTCAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGGTTGCTTAGCAACAGGACAATAATCTGCTTAACAAATGTGGAAGCCTTTTCACTAAGAGCTGCTGACCTTGAAGAAGTCACAATCCTTTTTACAAGGTTCTTGAGGAGTCCACTAGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATCACTTGCAGCAGCCCGGATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAACTCGTGATAATTCCTCACTATCAGATTAA 2331 0.4007 MANFEGIELPVLSETDEESYDAPLDSKFRSFASKTKSASFSIPMSSLESYGRETSLVGHTGPLLRERKTPFMQMSGPLYDNRGTGNILQQRIAVTGEKEEESKTENFSTFRSIGSSYWNNNYNDKNEHLMRSGRLGMCNDPYCTICPTYFNPSKPRNPKVSTTFDPKFRNVLYGDAKGFARKLFSFCSSCVPGVMNPHTKFVQKWNKILAICCLVAIFVDPLFFFVLYVEQDYNCIVINWRLTIALAILRSMNDFVYFCNILLQFRLAYVSPESRVVGAGDLVDQPKKIALNYLKSYFLFDLFVVVPLPQIMILVVLPNSLGGANSAKNLLRASILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFTINLLIFMLFGHVVGSCWYLFGLQRVNQCLRDACRNSNIPGCLKLIDCGRGYDGNNQAGLTSAQWNNNTDAINCLNPTTSSGFPSTGGDFNYGIYFPAVQLITENNVINKYVFSLFWGFQQISVFAGNMVPSYFVGEVLFTIAIIGLGLLLLALLIGNFQNFIQSLGRRRLEMQLRASDVEQWMSHRRLPGELRRRVRLAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFSFVKKVRVFAMMDEPILDSICERLRQKTYIKGSMILRQGGLVENMIFVVRGKLESIGEDGTRVPLSEGDACGEELLRWYLEHSSVSSDGRKVRLPGQRLLSNRTIICLTNVEAFSLRAADLEEVTILFTRFLRSPLVQGAIRYESPYWRSLAAARIQVAWRYRKKRLTRDNSSLSD 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1454g00005 776 SMART cnmp_10 608 740 IPR000595 -
Gabi1454g00005 776 SUPERFAMILY cAMP-binding domain-like 536 726 IPR018490 -
Gabi1454g00005 776 Gene3D Jelly Rolls 606 730 IPR014710 -
Gabi1454g00005 776 ProSiteProfiles cAMP/cGMP binding motif profile. 608 676 IPR000595 -
Gabi1454g00005 776 Gene3D - 206 533 - -
Gabi1454g00005 776 CDD CAP_ED 608 724 IPR000595 -
Gabi1454g00005 776 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 139 769 - -
Gabi1454g00005 776 Pfam Ion transport protein 205 536 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1454g00005 776 SUPERFAMILY Voltage-gated potassium channels 197 536 - -
Gabi1454g00005 776 Gene3D Helix hairpin bin 535 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1454g00005 Gabi-Chr1454 190484 197024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1454g00005 5 686 Ion Channels AT3G17700 56.686 0.0 756