Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1454g00004 ATGGCTCATTTTGAAAAAGATGAGGTGCCAATGCTGTCAGAAACACATGCTCGACATCAATCTGATGAAGCTGTGGATTATAATTTCCGGAGGCTTGTATACCGGACACGAAGTGCAACAATTTCTATTCCTATGGTCTCCATGGATCCCAATGAGAGAGAGGCTAGTCTTGTGGGACATACTGGTCCACTTTGTAGTGTGAGAAAAATCCCCTTTAAACAGATGAGTGGTCCACTGTATGCTACCCATGGAACTGGAAATCTTTTGCATCAGAGTATTGTTGTGACAGGAAACGAAGTAGCGGAGAGCAAGGAAGAAAAATTTTCTACTCGAGAAGGCACAAACAAAAGTAATTGGAATAACAAATATGATAGAAAAAATGAACACTTACTGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACTTACTTCAAGGCCTCGTCTCTAAGAAATCCAATAGCTTCGACTATATTTGATCCCAAGTTCCACAATGCTCTTGATGGGGATGCCAAGGGTTTTGGGGGAAAACTTTTTTCTTTCTGCTCTTCATATGTTCCTGGGGTTATGAACCCTCACACTAAAATCGTACAACAATGGAACAAGATTTTGGCCATTTTTTGCATGGTGGCAATTTTTGTGGATCCATTGTTTTTCTTCTTAATCTATGTGCAGAAGGATCATAAATGTATTGTTATCAACTGGACATGGACAAAAGTACTTGTTTCACTGAGAAGCATGACTGATTTTCTATATTTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATATTTCCCCCGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGACGGTCCCTGGGAAATTGCTTGTAATTATATGAAGGGTTATTTTTTTTTGGACTTTTTTGTTGTATTACCTTTTCCGCAGATAATGATATTGTTGGTCCTTCCAAATTCCTTCGGGTTATCAGGAGCAAATAATGCTAAGAATCTTCTGCGTGTACCAATCCTTGTACAGTATCTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCCACTGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCTGGTCATGTTGTTGGTTCTTGCTGGTATTACCTTGGTCTACTGAGGGTTAATCGATGTTTGCAACATGCCTGGGATAACCTTAATATTACTGGATGCCAGACATTCAATAAGTGTGATCGTGCGTTTCACCAGATATCAGCCCTGTGGATCAACAACACAGATGCCATTGCTTGTTTGAATTCCACTCCCGATAATAATCCTTATTATGGGATCTATGTCAATGCTGTAGAACTTACTATAGAAACTAAGGTGGTCAAAAAATATGTGTATGCGCTGTTTTGGGGCTTCCAGCAAATCAGTACTTTGGCTGGTAATCTAACCCCGAGCAAATTTGAGTTGGAAGTCCTCTTTACAATGACCATCATAGGATTGGGACTCTTACTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGTAGATCTAAGAAGGAGAGTACGACAGGCTGAACGGTATTCTTGGGCTGCAACAAGGGGGGTGAACGAGGAAATGCTTCTGGAGAATTTGCCAGAAGATCTCCAGACAGACATAAGACATCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTGCCCTGATGGATGAGCCAATCTTGGATGCCATCTGTGAGAGACTAAAACAAAAGACATACATCAAAGGAAGTAGAATTTTGAGTCATGGTGGTCATGTGGAGAAGATGGTCTTTGTTGTGCGTGGAAAATTGGAGAGTATTGGAGAAAATGGAATGGGAGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGCTTCCAAGGCAGAGGTTGCTGAGCAACAGGACAGTAAGGTGCCTAACAAATGTAGAGGCATTTTCACTCCGAGCTGCAGACCTTGAAGAACTCACAACCCTTTTCACAAGATTCTTGCGGAGCCCTCATGTTCAAGGAGCTCTAAGGTATGAATCACATTATTGGAGATCCCTTGCAGCAAACCGAATTCAGGTTGCATGGAGATACAGGAAGAAGTGTCTAAGTCGTGCTAATACCTCACAATCAGTTCAAACATTGAGTCGTAGGGTATACTGTAATATATGA 2334 0.4126 MAHFEKDEVPMLSETHARHQSDEAVDYNFRRLVYRTRSATISIPMVSMDPNEREASLVGHTGPLCSVRKIPFKQMSGPLYATHGTGNLLHQSIVVTGNEVAESKEEKFSTREGTNKSNWNNKYDRKNEHLLRSGQLGMCNDPYCTTCPTYFKASSLRNPIASTIFDPKFHNALDGDAKGFGGKLFSFCSSYVPGVMNPHTKIVQQWNKILAIFCMVAIFVDPLFFFLIYVQKDHKCIVINWTWTKVLVSLRSMTDFLYFLNILLQFRLAYISPESRVVGAGDLVDGPWEIACNYMKGYFFLDFFVVLPFPQIMILLVLPNSFGLSGANNAKNLLRVPILVQYLPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYYLGLLRVNRCLQHAWDNLNITGCQTFNKCDRAFHQISALWINNTDAIACLNSTPDNNPYYGIYVNAVELTIETKVVKKYVYALFWGFQQISTLAGNLTPSKFELEVLFTMTIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPVDLRRRVRQAERYSWAATRGVNEEMLLENLPEDLQTDIRHHLFKFVKKVRIFALMDEPILDAICERLKQKTYIKGSRILSHGGHVEKMVFVVRGKLESIGENGMGVPLSEGDACGEELLTWYLEHSSVSTDGKKVRLPRQRLLSNRTVRCLTNVEAFSLRAADLEELTTLFTRFLRSPHVQGALRYESHYWRSLAANRIQVAWRYRKKCLSRANTSQSVQTLSRRVYCNI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1454g00004 777 SUPERFAMILY cAMP-binding domain-like 526 720 IPR018490 -
Gabi1454g00004 777 Gene3D Helix hairpin bin 525 590 - -
Gabi1454g00004 777 Pfam Ion transport protein 208 526 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1454g00004 777 Gene3D - 197 523 - -
Gabi1454g00004 777 Gene3D Jelly Rolls 596 720 IPR014710 -
Gabi1454g00004 777 SUPERFAMILY Voltage-gated potassium channels 198 526 - -
Gabi1454g00004 777 ProSiteProfiles cAMP/cGMP binding motif profile. 598 666 IPR000595 -
Gabi1454g00004 777 CDD CAP_ED 598 714 IPR000595 -
Gabi1454g00004 777 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 139 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1454g00004 Gabi-Chr1454 146652 161568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1454g00004 2 676 Ion Channels AT3G17700 57.269 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1454g00004 K05391 - gsj:114390051 1155.58