Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1454g00003 ATGGCTCAGTTTGAAAAAGATGAGGTGCCAATGCTGTCAGGAACACATGTACAACGATCTGATGAACTTGGGGGTTCTAATTTCCGGAGGCTTGTAACCAGGACTCAAAGTGCATCAATTTCTATTCCTATGGTCTCCATGGAGTCTAATGAGAGAGAAACTAGTCTTGTGGGACACACTGGTCCGCTTCGTAGTGTGAGAAAAACTCCCTTTATGCAGATGAGTGGTCCACTATATGCTACCCCTGGAACTGGAAATCCTTTGCAGCAGAGTATTCTTGTGACAGGAAACAAAGTAGTGGAGAGCAAGGAAGAAAATTTTTTTGAAGGCACAGATGGGAATCATTGGAATAACAATTATGATAGAAAAAATGAACACTTGCTGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTACTGCACTACTTGCCCAACTTACTTCAAGGCCTCTCAGCTAAGAAATTCAAAAGCTTCGACTATATTTGATCCCAAGTTCCACAATGCTCTTTATGGGGATGCCAAGGGTTTTGGGAGAAAGCTTTTTTCGTTCTGCTCTTCATGTGTTCCTGGAGTTATGAACCCTCACACTAAAATTGTACAACAATGGAATCAGTTTTTGGCTATTTTTTGCTTGGTGGCAATTTTTGTGGATCCATTGTTTTTCTTCTTAATCTATGTGCAGAAGGATGATAAATGTATTATTATAAACTGGACAATGACAAAAACACTTGTTATAATTAGAAGCATGAATGATTTTGTATATTTCTTGAACGTTCTTCTCCAGTTTAGGTTGGCTTATGTTTCCCCTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCGAAGGAAATTGCTCTTAATTACCTGAAGAGTTATTTTCTTTTGGACTTTTTTGTTGTATTACCTCTTCCTCAGATAATGATATTGTCTGTCCTACCAAATTCCTTGGGGTCATCAGGAGCAAATTATGCGAAGAATCTTCTGCGTGCATCGATCCTTGTACAGTATATTCCCAGATTATTCAGGTTTCTGCCTCTACTAATTGGCCAGTCTCCAACTGGATTCATATTTGAGTCAGCCTGGGCAAATTTTATCATTAATCTTCTCATTTTTATGCTATCCGGTCATGTTGTTGGTTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTTTGCGAGATGCCTGCCATAAGTCTAATATTGATGGATGCATAGCATTAATTGATTGTGGCCATGCGTCTCCCCAGACATCAGCTCTGTGGATCAACAACACAGATGCCATTGCTTGTTTGGATTCTGGCTCTAGTTCTTTTTCTTATGGGATCTATGCCAGTGCTGTAGAACTTACTACAGAAACTAAGGTTGTCAACAAATATGTCTTTGCGCTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCTAACCCCGAGCAAATTTGTGTGGGAAGTCCTTTTTACAATGGCCATCATAGGATTGGGACTTTTACTGTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGGGTGAATGAGGAAATGCTTCTTGAGAATTTGCCAGAAGATCTCCGGACAGACATACAACGTCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTGCCCTGATGGATGAGCCAATCTTAGATGCCATCTGTGAGAGACTAAAACAAAAGACATACATCAAAGGAAGTAGAATTTTGACACAGGGTGGTCTTGTAGACAAGATGGTCTTTGTTGTGCGTGGAAAATTGGAGAGTATTGGAGAAAATGGAATGGGAGTTCCCTTATCTGAAGGTGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTGTAAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGGTTGCTGAGCAACAGGACAGTAAGGTGCTTAACAAATGTAGAGGCATTTTCACTCCGAGCCGTAGACCTTGAAGAACTCACAACCCTTTTCACAAGATTCTTGCGGAGCCCTCATGTTCAAGGAGCTCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCAGCAAACCGAATTCAGGTTGCATGGAGATACAGGAAGAAGCGTCTAAGTCGTGCTTATACCTCACAATCAGGTTAA 2289 0.4168 MAQFEKDEVPMLSGTHVQRSDELGGSNFRRLVTRTQSASISIPMVSMESNERETSLVGHTGPLRSVRKTPFMQMSGPLYATPGTGNPLQQSILVTGNKVVESKEENFFEGTDGNHWNNNYDRKNEHLLRSGQLGMCNDPYCTTCPTYFKASQLRNSKASTIFDPKFHNALYGDAKGFGRKLFSFCSSCVPGVMNPHTKIVQQWNQFLAIFCLVAIFVDPLFFFLIYVQKDDKCIIINWTMTKTLVIIRSMNDFVYFLNVLLQFRLAYVSPESRVVGAGDLVDHPKEIALNYLKSYFLLDFFVVLPLPQIMILSVLPNSLGSSGANYAKNLLRASILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACHKSNIDGCIALIDCGHASPQTSALWINNTDAIACLDSGSSSFSYGIYASAVELTTETKVVNKYVFALFWGFQQISTLAGNLTPSKFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEMLLENLPEDLRTDIQRHLFKFVKKVRIFALMDEPILDAICERLKQKTYIKGSRILTQGGLVDKMVFVVRGKLESIGENGMGVPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLLSNRTVRCLTNVEAFSLRAVDLEELTTLFTRFLRSPHVQGALRYESPYWRSLAANRIQVAWRYRKKRLSRAYTSQSG 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1454g00003 762 Gene3D Helix hairpin bin 521 586 - -
Gabi1454g00003 762 Gene3D Jelly Rolls 592 716 IPR014710 -
Gabi1454g00003 762 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1454g00003 762 Pfam Ion transport protein 205 522 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1454g00003 762 ProSiteProfiles cAMP/cGMP binding motif profile. 594 662 IPR000595 -
Gabi1454g00003 762 SUPERFAMILY cAMP-binding domain-like 522 715 IPR018490 -
Gabi1454g00003 762 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 136 756 - -
Gabi1454g00003 762 CDD CAP_ED 594 710 IPR000595 -
Gabi1454g00003 762 SUPERFAMILY Voltage-gated potassium channels 195 522 - -
Gabi1454g00003 762 Gene3D - 203 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1454g00003 Gabi-Chr1454 107653 117624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1454g00003 5 672 Ion Channels AT3G17700 60.444 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1454g00003 K05391 - ccaj:109789004 1237.63