Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1454g00002 ATGGCTCATTTTGAAAAAGATGAGGTGCCAACTCTGTCAGAAACACATGCTCAACATCAATCTGATGAAGCTGTGGATTCTAATTTCCGGAGGCTTGTATACCGGACACGAAGTGCATCAATTTCTATTCCTATGGTCTCCATGGATCCCAATGAGAGAGAAGCTAGTCTTGTGGGACATACTGGTCCACTTCGTAGTGTGAGAAAAATCCCCTTTAAACATATGAGTGGTCCACTGTATGCTACCCATGGAACTGGAAATCTTCTGCATCAGAGTATTGTTGTGACAGGAAACGAAGTAGTGGAGAGCAAGGAAGAAAAATTTTCTACTGGAGAAGGCACAGACGAAATAAATGCTAGAAAAAATGAACACTTACTGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACTTACTTCGAGGCCTCTTCTCTAAGAAATCCAAGAGCTTCGACTATATTTGATCCCAAGTTCCACAATGCTCTTTATGGGGATGCCAAGGGTTTTGGGGGAAAACTTTTTTCTTTCTGCTCTTCATATGTTCCTGGAGTTATGAACCCTCACACTAAAATCGTACAACAATGGAACAAGTTTTTGGCCATTTTTTGCCTGGTGGCGATTTTTGTGGATCCATTGTTTTTCTTCTTAATCTATGTGCAGAAGGATCATAAATGTATTGTTATCAACCTGACATGGACAAAAATACTTGTTTCACTGAGAAGCGTGATTGATTTTCTATATTTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATATTTCCCCTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGACGGTCCCTGGGAAATTGCTTCTAATTATATGAAGGGTTACTTTTTTTTGGACTTTCTGGTTGTATTACCTTTTCCGCAGATAATGATATTGTCTGTCCTACCAAATTCCTTCGGTTTATCAGGAGCAAATAATGCTAAGAATCTTCTGCGTGTACCAATCCTTGTACAGTATCTTCCCAGATTATTCAGGTTTCTGCCTCTGCTTATTGGCCAGTCTCCCACTGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCTGGGCATGTTGTTGGTTCTAGCTGGTACCATTTTGGTCTACAGAGGGTTAATCGATGTTTGCAACATGCCTACAATAGCACAGATGCCATTGCTTGTTTGAATTCCACTCCCAGTAATGATCCTTATTATGGGATCTATGCCAATGCTGTAGAACTTACTATAGAAACTAAAGTGGTCAAAAAATATTTGTATTCGCTGTTTTGGGGCTTCCAGCAAATTAGTACTTTGGGTGGTAATCTAACCCCGAGCAAATTTGAGTTGGAAGTCCTTTTTACAATGACCATCATAGGATTGGGACTCTTGCTTTTTGCCCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGATCTAAGAAAGAGAGTACGACAGGCTGAACGGTATTCTTGGGCTGCAACAAGGGGGGTGAACGAGGAAATGCTTATGGAGAATTTGCCAGAAGATCTCCAGACAGACATAAGACATCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTGCCCTGATGGATGAGGCAATCTTGGATGCCATATGTGAGAGACTAAAACAAAAGACATACATCAAAGGAAGTAGAATTTTGAGTCATGGTGGTCATGTGGAGAAGATGGTCTTTGTTGTGCGTGGAAAATTGGAGAGTATTGGAGAAAATGGAATGGGAGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTTTGACATGGTATCTTGAACATTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGCTTCCAAGACAGAGGTTGCTGAGCAACAGGACAGTAAGGTGCTTAACAAATGTAGAGGCATTTTCACTCCGTGCTGCAGACCTTGAAGAACTCACAACCCTTTTCACAAGATTCTTGCGGAGCCCTCATGTTCAAGGAGCTCTAAGGTATGAATCACATTATTGGAGATCCCTTGCAGCAAACCGAATCCAGGTTGCATGGAGATACAGGAAGAAGTGTCTAAGTCGTGCTAATACCTCACAATCAGTTCAAATATTGAAGTCGGGAGGAAAGGGTTTTCAATCTATAATGATATTGTCTGTCCTACCAAATTCCTTGGGGTCATCAGGAGCAAATTATGCGAAGAATCTTCTGCGTGCATCGATCCTTGTACAGTATATTCCCAGATTATTCAGGTTTCTGCCTCTACTAATTGGCCAGTCTCCAACTGGATTCATATTTGAGTCAGCCTGGGCAAATTTTATCATTAATCTTCTCATTTTTATGCTATCCGGTCATGTTGTTGGTTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTTTGCGAGATGCCTGCCATAAGTCTAATATTGATGGATGCATAGCATTAATTGATTGTGGCCATGCGTCTCCCCAGACATCAGCTCTGTGGATCAACAACACAGATGCCATTGCTTGTTTGGATTCTGGCTCTAGTTCTTTTTCTTATGGGATCTATGCCAGTGCTGTAGAACTTACTACAGAAACTAAGGTTGTCAACAAATATGTCTTTGCGCTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCTAACCCCGAGCAAATTTGTGTGGGAAGTCCTTTTTACAATGGCCATCATAGGATTGGGACTTTTACTGTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGGGTGAATGAGGAAATGCTTCTTGAGAATTTGCCAGAAGATCTCCGGACAGACATACAACGTCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTGCCCTGATGGATGAGCCAATCTTAGATGCCATCTGTGAGAGACTAAAACAAAAGACATACATCAAAGGAAGTAGAATTTTGACACAGGGTGGTCTTGTAGACAAGATGGTCTTTGTTGTGCGTGGAAAATTGGAGAGTATTGGAGAAAATGGAATGGGAGTTCCCTTATCTGAAGGTGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTGTAAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGGTTGCTGAGCAACAGGACAGTAAGGTGCTTAACAAATGTAGAGGCATTTTCACTCCGAGCCGTAGACCTTGAAGAACTCACAACCCTTTTCACAAGATTCTTGCGGAGCCCTCATGTTCAAGGAGCTCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCAGCAAACCGAATTCAGGTTGCATGGAGATACAGGAAGAAGCGTCTAAGTCGTGCTTATACCTCACAATCAGGTTAA 3606 0.4193 MAHFEKDEVPTLSETHAQHQSDEAVDSNFRRLVYRTRSASISIPMVSMDPNEREASLVGHTGPLRSVRKIPFKHMSGPLYATHGTGNLLHQSIVVTGNEVVESKEEKFSTGEGTDEINARKNEHLLRSGQLGMCNDPYCTTCPTYFEASSLRNPRASTIFDPKFHNALYGDAKGFGGKLFSFCSSYVPGVMNPHTKIVQQWNKFLAIFCLVAIFVDPLFFFLIYVQKDHKCIVINLTWTKILVSLRSVIDFLYFLNILLQFRLAYISPESRVVGAGDLVDGPWEIASNYMKGYFFLDFLVVLPFPQIMILSVLPNSFGLSGANNAKNLLRVPILVQYLPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSSWYHFGLQRVNRCLQHAYNSTDAIACLNSTPSNDPYYGIYANAVELTIETKVVKKYLYSLFWGFQQISTLGGNLTPSKFELEVLFTMTIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRKRVRQAERYSWAATRGVNEEMLMENLPEDLQTDIRHHLFKFVKKVRIFALMDEAILDAICERLKQKTYIKGSRILSHGGHVEKMVFVVRGKLESIGENGMGVPLSEGDACGEELLTWYLEHSSVSTDGKKVRLPRQRLLSNRTVRCLTNVEAFSLRAADLEELTTLFTRFLRSPHVQGALRYESHYWRSLAANRIQVAWRYRKKCLSRANTSQSVQILKSGGKGFQSIMILSVLPNSLGSSGANYAKNLLRASILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACHKSNIDGCIALIDCGHASPQTSALWINNTDAIACLDSGSSSFSYGIYASAVELTTETKVVNKYVFALFWGFQQISTLAGNLTPSKFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEMLLENLPEDLRTDIQRHLFKFVKKVRIFALMDEPILDAICERLKQKTYIKGSRILTQGGLVDKMVFVVRGKLESIGENGMGVPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLLSNRTVRCLTNVEAFSLRAVDLEELTTLFTRFLRSPHVQGALRYESPYWRSLAANRIQVAWRYRKKRLSRAYTSQSG 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1454g00002 1201 Pfam Ion transport protein 764 961 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1454g00002 1201 Pfam Ion transport protein 203 495 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1454g00002 1201 Gene3D Helix hairpin bin 494 559 - -
Gabi1454g00002 1201 Gene3D Helix hairpin bin 960 1025 - -
Gabi1454g00002 1201 ProSiteProfiles cAMP/cGMP binding motif profile. 567 635 IPR000595 -
Gabi1454g00002 1201 Gene3D - 197 492 - -
Gabi1454g00002 1201 SUPERFAMILY cAMP-binding domain-like 495 688 IPR018490 -
Gabi1454g00002 1201 SUPERFAMILY Voltage-gated potassium channels 193 495 - -
Gabi1454g00002 1201 ProSiteProfiles cAMP/cGMP binding motif profile. 1033 1101 IPR000595 -
Gabi1454g00002 1201 MobiDBLite consensus disorder prediction 1 24 - -
Gabi1454g00002 1201 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 134 730 - -
Gabi1454g00002 1201 CDD CAP_ED 1033 1149 IPR000595 -
Gabi1454g00002 1201 SUPERFAMILY cAMP-binding domain-like 961 1154 IPR018490 -
Gabi1454g00002 1201 CDD CAP_ED 567 683 IPR000595 -
Gabi1454g00002 1201 SUPERFAMILY Voltage-gated potassium channels 781 996 - -
Gabi1454g00002 1201 Gene3D - 706 958 - -
Gabi1454g00002 1201 SMART cnmp_10 567 699 IPR000595 -
Gabi1454g00002 1201 SMART cnmp_10 1033 1168 IPR000595 -
Gabi1454g00002 1201 Gene3D Jelly Rolls 1031 1155 IPR014710 -
Gabi1454g00002 1201 Gene3D Jelly Rolls 565 689 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1454g00002 Gabi-Chr1454 107653 135586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1454g00002 2 645 Ion Channels AT3G17700 56.637 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1454g00002 K05391 - gmx:100794895 1107.43