Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1454g00001 ATGGCTCATTTTGGAAAAGATGAGGTGCCAACGCTGTCAGAAATACGGTCCGATGAACTTGTGGATTCTAATCCCCGAAGGCTTGTATCCAGGACACCAAGAGCATCAATTTCTATTCCTATGGTCTCCGTGGAGCCCAATGAGAGAGAAAATAGTCTTGCGGGACCCACTGGTCCACTTCATAGGGTATCTTCAACCAGAGACAATCTTGTTCGGTTCAAGAACATGTTTATGATGCTCCAGAATCCTCATTATGCCTATGACCAAGGTTTTGGGATAAATCTTTTTTCTCTCTGCTCTTCCTATGTGGACCCTCACGCTGAAAGCATACAACAATGGAACAAGTTTTTGGCGATATCTTGCTTGATGGCAATTTTTGTGGATCCATTGTTTTTCTTCTTAATCTATGTGCAGAAGGATCATAAATGTATTGTTATCAACTGGACATTGACAAAAATACTTGTTTCACTTAGAAGCATAAATGACTTTATTTATTTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCAGGGTCAAGGGTGGTTGGTACTCGAATTTTAGTTATCAATCGTAAGGAAATTGCTCTTCATTATCTGAACGGTTATTTTCGTTTGGACTTTTTTGTTGTGTTACCTCTTCCTCAGATAATGATACTGTGTGTCCTACCAAATTCCTTGGGGTCATCAGGAGCAAATCATGCGAAGAATCTTCTGCGCGCATCGATCCTTGTACAGTATATGCTCAGATTATTCAGGTTTCTGCCTCTACTAATTGGCCAGTCTCCAACTGGATTAACATTTGAGTCAGCATGGGCAAATTTCATCATGAATCTTCTCATTTTTATGCTGTCTGGTCATGTTGTTGGTTCTTGTTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTTTGCGAGATGCCTGCCTTAAGTCTAATATTGATGGATGCATGACATTCATTGATTGTGGCCGTGCGTCTCCCCAGAAATCAGCTCTGTGGATCAACAACACAGATGCCACTGCTTGTTTGGATTCCAGCTCCGGTGCTTTTCCTTATGGGATCTATGCCAGTGCTGTAGAACTTACTATAGAAACTAAGGTGGTCAACAAATATGTTTATGCGCTTTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCTAACCCCGAGCAAATTTGTGTGGGAAGTCCTTTTTACAATGGCCATCATAGGATCGGGACTTTTACTGTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGACGCCGTGATGTTGAGCAATGGATGAGCCATTGTCGCTTCCCAGAAGATCTAAAAAAGAGTGTAAGACAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGGGTGAATGAGGAAATGCTTTTTGAGAATTTGCCAGAATATCTCCGGGCAGAGATAAGATGTCATCTCTTCAGATTTCTTAAGAAAGTTCGAATTTTTGTTCGAATTTTTGCCCTGATGGATGTGCCAATCTTAGATGCCATCTGTGAGAGACTAAAACAAAAGACATACGTCGAAGAAAGTAGTATTTTGACACGGGGTGGTCTTGTTGACAAGATTGTCTTTGTTATGCGTGGAAAATTGGAGAGTATTGGAGAAAATGGAAAGGTGGTTCGCTTATCAGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGCTTCCAGGACAAAGGTTGCATAGCAACAGGACAGTAAAGTGCTTAACAAATGTAGAGGCACTTTCACTCCGTGCTGCAGACCTTGAAGAACTCGCAACCCTTTTCCCGAGATTCTTTCGGAACCCTCAAGCTCTAGCACCCCTCCTGAGATTTTTCTCAGCAATCCGAATTCAGAGTGCTTGGAGAGACTGGAAGAAGCGTCCAAGTCCTGCACTTATTGGATAA 2004 0.4222 MAHFGKDEVPTLSEIRSDELVDSNPRRLVSRTPRASISIPMVSVEPNERENSLAGPTGPLHRVSSTRDNLVRFKNMFMMLQNPHYAYDQGFGINLFSLCSSYVDPHAESIQQWNKFLAISCLMAIFVDPLFFFLIYVQKDHKCIVINWTLTKILVSLRSINDFIYFLNILLQFRLAYVSPGSRVVGTRILVINRKEIALHYLNGYFRLDFFVVLPLPQIMILCVLPNSLGSSGANHAKNLLRASILVQYMLRLFRFLPLLIGQSPTGLTFESAWANFIMNLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACLKSNIDGCMTFIDCGRASPQKSALWINNTDATACLDSSSGAFPYGIYASAVELTIETKVVNKYVYALFWGFQQISTLAGNLTPSKFVWEVLFTMAIIGSGLLLFALLIGNIQNFLQALGRRRLEMQLRRRDVEQWMSHCRFPEDLKKSVRQAERYSWAATRGVNEEMLFENLPEYLRAEIRCHLFRFLKKVRIFVRIFALMDVPILDAICERLKQKTYVEESSILTRGGLVDKIVFVMRGKLESIGENGKVVRLSEGDACGEELLTWYLEHSSVSTDGKKVRLPGQRLHSNRTVKCLTNVEALSLRAADLEELATLFPRFFRNPQALAPLLRFFSAIRIQSAWRDWKKRPSPALIG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1454g00001 667 Pfam Ion transport protein 115 432 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1454g00001 667 Gene3D - 115 429 - -
Gabi1454g00001 667 SMART cnmp_10 508 643 IPR000595 -
Gabi1454g00001 667 Gene3D Jelly Rolls 506 630 IPR014710 -
Gabi1454g00001 667 SUPERFAMILY cAMP-binding domain-like 432 634 IPR018490 -
Gabi1454g00001 667 Gene3D Helix hairpin bin 431 496 - -
Gabi1454g00001 667 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 101 659 - -
Gabi1454g00001 667 CDD CAP_ED 508 631 IPR000595 -
Gabi1454g00001 667 ProSiteProfiles cAMP/cGMP binding motif profile. 508 576 IPR000595 -
Gabi1454g00001 667 SUPERFAMILY Voltage-gated potassium channels 110 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1454g00001 Gabi-Chr1454 32064 93082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1454g00001 59 586 Ion Channels AT3G17700 59.551 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1454g00001 K05391 - ccaj:109789004 849.736