Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1453g00005 ATGAGTTGTACGAATTTGGAGTTGCATTTGGGAATTTTGTTCATCTCAGTGATGATTTTCACTGGAACTTTATGTGTTGGGGACACTGACCCGCTTGATGTTGCAGCAATCAATAGTTTATATGTGGCTCTGGGTTCACCACCCCTTCAGGGTTGGAAACCCATAGGAGGAGATCCGTGTTTGGAACTGTGGCAAGGTGTGAGTTGTGTCTTCTCCAACATAACTGCCTTACAACTGGGAGGCACGAATTTGGGTGGACAGCTGGGAAGTAATTTGGATTTCCCATCCATCATAGAAATGGATCTTAGCAACAACCACATTGGAGGGACTATTCCATCCACTTTATCCCCTACTCTGAGAAACTTGTCTCTGTCAGATAACCAGTTAACTGGAGGCATTCCAGATGCCTTATCCTCATTAACTCAATTGTCAGACTTATCATTAAAAAATAACCTTCTAGATGGACAAATCCCAGATACGTTTCTACAGCTCACTGGTTTGATGAATATGGATCTGTCAGGTAACAACTTGAGTGGTCAGCTGCCTCCCTCAATAGGGAATTTGTCATCGCTTACTACATTATACTTGCAGAACAATCAACTTTCTGGAACCCTTTTTGATTTGCAGGACCTCCCGCTTCAGGATCTGAATATAGAAAACAACATTTTCTCAGGGCCGATTCCTCCCAAGTTGTTGACTATCCCTAATTTCAGAAAAGATGGGAATCCTTTTAATACTACTGTCATTCCATCACCTCTAGCTGCATCTCCTTCACCTGTGGCTTTGGCTCGTTCCCCAGAAGAATCACCTTGGAAAGTGGCAAATAGTCCCTCTACTTCCATGAAAGCACCAACACTAGCAGTTGCTAGGAGGTCTTTCAAAGCTAAGAGCATATTTTGGATTGCTGGTGGAGGGTTTTTAATATTTATTGCATTAGGAATTTGTCTTTTAATGTCGTGGTGTTTTAAGAGAAGACCAGAGAACAAAAATTATAAGAAACACAACGTGGGTGTGGATTCAGGACCTTTGCATAAACATACATGCAGTGACTCTTCTTTTGAAGCAACTAATGATGAGGAGAAAGCTGAGAAAGCATCACTTGTATATGGAGTACCAAATAGAAGAACGAATTTGATTCGAAATGTGCCGGATGAACAAGAAATACATGTGAAAACAGTATCTGCAACTTCAGAATGCAAAACTGTTTATGAATTAAACAATACAAGATGGGGTTCCAAACTTCCACCCCTGCAGCCAGCACCTCCACATCCTCTCCCAATCATTCCTGGGGAGAAGTTCATCATAAATCCAGCTATATCTACCAAAGTAACTGAAAGACAAATTATAATGAGTTCTGTCAAAGTTTATACTGTTGCAACACTTCAGCAGTACACAAATAGTTTTTGCCAAGAAAATTATATTGGGGAAGGCACACTTGGCCCAGTTTATAGGGCTGAGCTCCCTGATGGAAAGCTACTGGCAGTTAGGAAGCTGAATGCCACTGCTTCCATGGGGCAAAATCATGAACAGTTTCTTCAATTAGTTTCCACTATCTCCAAAATTCAACATGCTAATATTGTACAGCTTATGGGCTACTGTGCTGAGCATAGCCAACGATTACTTGTATATGAGTATTGCAATATTGGGACCCTGCATGATGCATTGCATACAGATGATGAACTTCAGATTAAACTTTCATGGAATGAACGGATTCAGGTGTCACTTGCAGCTGCAAAAGCTTTAGAGTATCTGCATGAGCACTTTCAGCCACCTATTGTGCACCGAAATTTTAGATCTGCTAATGTTCTCCTGAATGACAAGTTAGAAGTGAAAGTCTCTGATTGTGGATTAGGTTCTCTACTATCTTCAGGCTTTGCTGGTCAGTTGTCAGGACGCTTCCTAACAGCTAATGGTTACAGTGCTCCAGAATTTGAGTCTGGAATTTATACAAAGCAAAGTGATGTCTTTAGTTTTGGAGTTGTGCTGCTAGAACTTCTCACTGGACGAAAATCCTATGACAGCTCACGGCCTCTTGGAGAGCAATTTTTGGTAAGATGGGCAGTTCCTCAACTACATGACATTGATGCATTGTCAAAAATGGTTGACCCTTCCTTAAATGGAGCCTATACTATGAAATCCTTGTCACGTTTTACAGATATTATTTCTTCATGTATACAGCATGAACCTGAATTCCGGCCAGCAATGTCAGAAATTATTCTGGATCTCTTGCGGATGATGTAA 2241 0.4105 MSCTNLELHLGILFISVMIFTGTLCVGDTDPLDVAAINSLYVALGSPPLQGWKPIGGDPCLELWQGVSCVFSNITALQLGGTNLGGQLGSNLDFPSIIEMDLSNNHIGGTIPSTLSPTLRNLSLSDNQLTGGIPDALSSLTQLSDLSLKNNLLDGQIPDTFLQLTGLMNMDLSGNNLSGQLPPSIGNLSSLTTLYLQNNQLSGTLFDLQDLPLQDLNIENNIFSGPIPPKLLTIPNFRKDGNPFNTTVIPSPLAASPSPVALARSPEESPWKVANSPSTSMKAPTLAVARRSFKAKSIFWIAGGGFLIFIALGICLLMSWCFKRRPENKNYKKHNVGVDSGPLHKHTCSDSSFEATNDEEKAEKASLVYGVPNRRTNLIRNVPDEQEIHVKTVSATSECKTVYELNNTRWGSKLPPLQPAPPHPLPIIPGEKFIINPAISTKVTERQIIMSSVKVYTVATLQQYTNSFCQENYIGEGTLGPVYRAELPDGKLLAVRKLNATASMGQNHEQFLQLVSTISKIQHANIVQLMGYCAEHSQRLLVYEYCNIGTLHDALHTDDELQIKLSWNERIQVSLAAAKALEYLHEHFQPPIVHRNFRSANVLLNDKLEVKVSDCGLGSLLSSGFAGQLSGRFLTANGYSAPEFESGIYTKQSDVFSFGVVLLELLTGRKSYDSSRPLGEQFLVRWAVPQLHDIDALSKMVDPSLNGAYTMKSLSRFTDIISSCIQHEPEFRPAMSEIILDLLRMM 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1453g00005 746 Gene3D Phosphorylase Kinase; domain 1 433 545 - -
Gabi1453g00005 746 SUPERFAMILY L domain-like 36 236 - -
Gabi1453g00005 746 Gene3D Ribonuclease Inhibitor 35 251 IPR032675 -
Gabi1453g00005 746 ProSiteProfiles Leucine-rich repeat profile. 190 212 IPR001611 GO:0005515
Gabi1453g00005 746 ProSiteProfiles Protein kinase domain profile. 468 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1453g00005 746 Pfam Leucine rich repeat 146 201 IPR001611 GO:0005515
Gabi1453g00005 746 SUPERFAMILY Protein kinase-like (PK-like) 446 742 IPR011009 -
Gabi1453g00005 746 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 546 746 - -
Gabi1453g00005 746 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 436 545 - -
Gabi1453g00005 746 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 255 - -
Gabi1453g00005 746 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 739 - -
Gabi1453g00005 746 Gene3D Transferase(Phosphotransferase) domain 1 547 745 - -
Gabi1453g00005 746 Pfam Protein tyrosine and serine/threonine kinase 471 741 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1453g00005 Gabi-Chr1453 90347 101924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1453g00005 19 746 Strubbelig Receptor Gene Family AT4G03390 50.710 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gabi1453g00005 PK_Tyr_Ser-Thr 4.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1453g00005 - - gmx:100793423 985.711