Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1453g00001 ATGGCGAACGAGGACTTCGACTTTTCGGAACTGCTCCATGCTGGCGCTGACAATGATCCCATGTTTTATATAGATATTCAGACCGTTATGAAGGTCCTCGATGAGGAGGATTTTGGCGACCCTAAGGAGAGTAGTCCCGAGGATTCTTCATCAAAAAACGTTTCACCGGATGAATCTGGCATCCATGATACTTTTCAGATTCAAAATGGGTCTCAAGTTTTAGAAGATCCACATTTTTCAAGGTTGGAATTAGGGGAATCAGTCGCGGGCTGTTCTACATTCTGCTCAGGTGTGTCTGATTCTGGGGCCATAGGTTCAGTTGGTTTATCTGATTCCACAGCAAATTCTATGCTTGACTGTGAACATGAAACCAAGGGACCTCCATCTCAGGCTTGCTCTTCCCCGAATGCTTTTGCTGGTAGTTATAGGGACTCATTCTCTCTGGGTGAAAGTGATGAGATTTGCTACACAGAAAGGACAGGAGTTTCTAAACTTGAGATTCCTGCTCATAGTGTGGAAACAAGATTCCCTGAGGCACATTCAAACAATATATCAGTTTGTGAAGATAATTTGAATCTGAGTATGTGGAAGGGTGAAAACGAGACTCAATACAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCACTCAGTTCTATCAATGAGAATGGTGATGTAAATTTTGAAGATTATGTTGAAGACATCATTGGAGGAGTTTCTGGGCAACAGGAAAATGACTCTTGTACTTCTTTTGAAATATCTGTCATGGATGCTGATAGATCTTGGCATGTTGCAACTTCAACTGATTCTGCTACTTTTCAAGGTTCCCATGTTCCCAGTGAATTTATCGACTACGATTTATCTTCGAATTATTACCAGGGAACAGTTGATAGACCCTTTGTTGCTGACTCATCTTTTGGTTTTATGCCTAATGGTATTTGTTCTCAATTATGGACTAATGAAGAAATGATGAGTAACATGAAGACTGAAAATGCGGAATTCCATTCTGATATGGCATGTATGAGTAGTGGCATGCAATCAAGCACTACTGGGGGGATATCTTTTCATGATAATCAACTTACGTTTGCTCATAGTGGTTATCCATCATTTTTTTCTGGTAAGGTTATCTTTGACAACAAGGCATCAGTGCCACTTTCAACTTACCCTTCATACATGCAATGTGGAGATGGACTGATTACACCTTACCAAAACAATTTTCAAAATGATGATACTGAGTTGAAACAATTGCCTGGTGTTTTTCCTTCTATGGGATGTCAGAGTTACAAATGTTTTAAAGATGAGGATAATTATGCAGTTGTAACATCTGAGATATCCAATCATTATCAAGATATCATTGATGGAACTGCTTTTCAAGGAAACATGGGCAATTTTAATTTAAAAGCCGCAGATAAATCCTTGCAGCATGCCCAAGCACTAATTGGCTGTGAGAAGCAGTTTGGTTGTGTTGAGAGAGAACGAGGGGGAAAAATGATTTTACATAAACATATTGGTTCTCATCTTTCAAAAGTAAGTGCTGAGAATTTCCATGTTGAGGATGACTCGAATGTTTGCATTATTGAAGACATCAGTCACCCTGCATCTACAAGTCATTCTGCAGTCATTGGGAATTCCCTTAATATATCTCAATCTTCTAGATTTGTTGATTCCCAACCTTACATGGTTGGAAGCACAAGGTTGAAGGCATGTGATGAGAGAAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAACGGCAGAAGTTAGCCCACCAGATGGATTGTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGTTCATATTGCTCAGGAGGAATTCTAGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCCTTAATATTACAGGAAAGAGCTCCAATACTTAATGCATGCCCCAATGCTCAAAAAGGTGAATTAGAAACTTTGAATCTGGATGCGGACGATGACATGCTTCCTCAAAATGGTGGAGTGAAGAAAGAATCTGATATGTGTCAGGATATGTCAAGTAGATATCCAACCATGAGCATGAGTTTATTGATGCAAACAATGGGAAGGCCATCTGCTGGAACCCTTATTGTTTGTCCCACTAGTGTCTTGCGCCAATGGGCTGAGGAGTTGCATAATAAGGTAACCAGTCAAGCAAATCTCTCTGTACTAGTGTACCATGGAAGCAATCGAACAAAAGATCCATATGAGGTGGCCAAGTATGATGTTGTTCTGACAACTTATTCGATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAGGGAATTTCTGAAGATCATGCTGACCCAAATAGGAAAAGGAAAAGCCCTTCTAATTCTAAGCAGACTCTAGTTGACAAAGATGTTGAAGAAAAGGGAACTTTTGAAGATCATAGTGTACCAAGTAAGAAAAGGAAAAGCCATTCTAATTCTAGAAGAAGTGGCAAGACGGAATTGGACAGCACAGAGGCTGTTGCTCGGCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGTAGATGGTGTTTGTCAGGGACTCCGATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCATATGCTATCTATACATCATTCTGTTCTATGATTAAGATCCCAATTAACAGAAATCCAACAAAAGGGTATAGAAAACTACAAGCTGTTTTAAAGACAATAATGCTGCGTCGGACTAAAGGCTCACTTCTCAATGGAGAACCTATTATTTCTTTGCCACCGAAATTTGTAGAGCTTAAAAAAGTTGAGTTTTCAAGGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCGGATGCTGGAACTGTCAAGCAAAATTATATCAATATTTTGTTGATGCTTCTGCGTCTTAGACAAGCTTGTGATCACCCTCTACTTGTGAAGCGTTACAAATCTAACTCTCTATGGAGATCTTCAGTTGAAATGGCAAAGAAGCTTCCTCAGGGAAAACAAATCTCTCTTCTGAATTGTTTAGAGGTTTCGTTGGCCCTCTGTGGCGTTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAATTTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTTTCCGGTGATGACAACCAGTGCCCAGCTACAAATTGCAAAACTCAAATTGGCACATCTTCAGTGTTTTCCAAAGCCGCACTGATCAGTTGTCTTTCTGGTCAGGGTTGTGATGATTCACCTGATTGCTCCGACTCTGAAGTGGAGGAATTTGAGCCTTGGTCTCAGAGTCAGCCATATAATTCTTCGAAAATTAAGGCTGCACTTGAGGTATTGAAGTCATTGTGTAAGCCACAGTGCTATACACCAAAAAGTATTTCTGTGCATAACACTTCCAGGGAAAATAATGACTGCCCTGGGAACCCCTCTGATGCTAATAATGGGAAATCCGTCCAGGATTTTCCTGAGAGTCAAAAATTGTCTGGGAATAGAAGCTCTAATGATTCAGTAACTGTTTTTGGGGAGAAAGCAATTGTGTTTTCTCAGTGGACGAGGATGCTAAATTTGCTTGAAACGTGTCTTCAAAATTCTTCGATTCAATATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCCGTAAAGGATTTTAATACTCTTCCCGAGGTATCGGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTGTGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGTTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAGAAGCGAGAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGTCGTCAGAGTCGCCTTACAGTGGATGATTTGAAATATTTGTTCATGATGTGA 4155 0.4072 MANEDFDFSELLHAGADNDPMFYIDIQTVMKVLDEEDFGDPKESSPEDSSSKNVSPDESGIHDTFQIQNGSQVLEDPHFSRLELGESVAGCSTFCSGVSDSGAIGSVGLSDSTANSMLDCEHETKGPPSQACSSPNAFAGSYRDSFSLGESDEICYTERTGVSKLEIPAHSVETRFPEAHSNNISVCEDNLNLSMWKGENETQYKHVGEDVESEHASLSSINENGDVNFEDYVEDIIGGVSGQQENDSCTSFEISVMDADRSWHVATSTDSATFQGSHVPSEFIDYDLSSNYYQGTVDRPFVADSSFGFMPNGICSQLWTNEEMMSNMKTENAEFHSDMACMSSGMQSSTTGGISFHDNQLTFAHSGYPSFFSGKVIFDNKASVPLSTYPSYMQCGDGLITPYQNNFQNDDTELKQLPGVFPSMGCQSYKCFKDEDNYAVVTSEISNHYQDIIDGTAFQGNMGNFNLKAADKSLQHAQALIGCEKQFGCVERERGGKMILHKHIGSHLSKVSAENFHVEDDSNVCIIEDISHPASTSHSAVIGNSLNISQSSRFVDSQPYMVGSTRLKACDERNILRVALQDLSQPTAEVSPPDGLLAVPLLRHQRIALSWMVQKETSSSYCSGGILADDQGLGKTVSTIALILQERAPILNACPNAQKGELETLNLDADDDMLPQNGGVKKESDMCQDMSSRYPTMSMSLLMQTMGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGISEDHADPNRKRKSPSNSKQTLVDKDVEEKGTFEDHSVPSKKRKSHSNSRRSGKTELDSTEAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAIYTSFCSMIKIPINRNPTKGYRKLQAVLKTIMLRRTKGSLLNGEPIISLPPKFVELKKVEFSREERDFYSRLEADSRAQFQEYADAGTVKQNYINILLMLLRLRQACDHPLLVKRYKSNSLWRSSVEMAKKLPQGKQISLLNCLEVSLALCGVCNDPPEDAVVSICGHVFCNQCICEHLSGDDNQCPATNCKTQIGTSSVFSKAALISCLSGQGCDDSPDCSDSEVEEFEPWSQSQPYNSSKIKAALEVLKSLCKPQCYTPKSISVHNTSRENNDCPGNPSDANNGKSVQDFPESQKLSGNRSSNDSVTVFGEKAIVFSQWTRMLNLLETCLQNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKREMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1453g00001 1384 CDD SF2_C_SNF 1229 1336 - -
Gabi1453g00001 1384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1061 1119 IPR013083 -
Gabi1453g00001 1384 Pfam Zinc finger, C3HC4 type (RING finger) 1068 1104 IPR018957 GO:0046872
Gabi1453g00001 1384 SMART helicmild6 1243 1326 IPR001650 -
Gabi1453g00001 1384 MobiDBLite consensus disorder prediction 48 63 - -
Gabi1453g00001 1384 MobiDBLite consensus disorder prediction 777 847 - -
Gabi1453g00001 1384 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 616 914 IPR014001 -
Gabi1453g00001 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 960 1383 IPR027417 -
Gabi1453g00001 1384 Gene3D - 799 964 IPR038718 -
Gabi1453g00001 1384 MobiDBLite consensus disorder prediction 1182 1223 - -
Gabi1453g00001 1384 Pfam SNF2-related domain 615 1029 IPR000330 GO:0005524|GO:0140658
Gabi1453g00001 1384 ProSitePatterns Zinc finger RING-type signature. 1083 1092 IPR017907 -
Gabi1453g00001 1384 Gene3D - 1122 1383 IPR027417 -
Gabi1453g00001 1384 MobiDBLite consensus disorder prediction 34 63 - -
Gabi1453g00001 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 952 IPR027417 -
Gabi1453g00001 1384 SMART ultradead3 597 931 IPR014001 -
Gabi1453g00001 1384 ProSiteProfiles Zinc finger RING-type profile. 1068 1107 IPR001841 -
Gabi1453g00001 1384 Pfam Helicase conserved C-terminal domain 1228 1326 IPR001650 -
Gabi1453g00001 1384 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1220 1379 IPR001650 -
Gabi1453g00001 1384 CDD DEXDc_SHPRH-like 601 952 - -
Gabi1453g00001 1384 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 829 964 - -
Gabi1453g00001 1384 MobiDBLite consensus disorder prediction 777 829 - -
Gabi1453g00001 1384 Gene3D - 695 791 IPR038718 -
Gabi1453g00001 1384 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 528 1383 - -
Gabi1453g00001 1384 SUPERFAMILY RING/U-box 1065 1111 - -
Gabi1453g00001 1384 Gene3D - 571 661 IPR038718 -
Gabi1453g00001 1384 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 694 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1453g00001 Gabi-Chr1453 15743 24786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1453g00001 524 1383 RAD5 or RAD16-like Gene Family AT1G61140 60.023 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1453g00001 SNF2_N 1.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1453g00001 - - gmx:100802436 1990.7