Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1451g00003 ATGACACAGCTAACACTACCTCATCCTTCTTCCTTCACCTATGAATGGATTTATGATGTCTTCCTCAACTTTAGAGGTGTTGATACCCGCAAAAATTTCACTGGAAATCTCTACAATTCTCTTCATGAAAGGGGTATTCACACCTTCATTGATGATGAAGGACTCAACAAAGGTGAAGAAATCACACCATCTCTTCTCCAAGCCATTCAAGATTCTAGGATTTTCATTGCTGTTTTCTCTAAAAACTATGCGTCCTCTACATATTGCTTGAAAGAACTTGTCATGATCCTTGAGTGCTCAAAGGCACAAGGACGGTTGTTTTGGCCTGTTTTTTATGATGTGGACCCATCACAAGTTCGGCACCAAAGTGGGGCTTATGCAGAAGCTTTGGCTAAACATGAGGAGAGGTACAAAGATGACAAGGATATGGTCAAAGAATGGAGGAAGGCTTTATTTCAAGCTGCTAATATGTCTGGATCACATTTCCTACTCGGTTCTCAATCAGAATATCAATTTATTAGAAAGATTGTTGAAGAAGTCTCTACAAAGATCAATCGCTGTCCTTTATATGTTGCTGATAAGCCGGTTGCATTAGAGTCTCGAGTGCTAGAAGTGACATCCCTCCTAGGACTTGGGTCTGATGAGGGAGTCAACATGGTAGGCATTCATGGAATCGGTGGGATAGGAAAATCAACACTTGCTCGAGCTGTATATAACTTTATTGCTGATCAATTTGATGGTTTTTGTTTCCTTGCTGACATACGAGAAAGGGCAATTGATAATCATGGTCTTGTACAACTCCAAGAAACATTACTCTCTGAACTGCTTGGGGAGAAAGATATTAAAGTGGGAGATGTTAACAGAGGAATTCCAATAATAAAAAGGAGGCTTCATCGAAAGAAGGTCCTTTTGATTCTTGACGATGTTGACAAACTGAAGCAGTTAAAGGTAATTGCAGGAGGACATGATTGGTTTGGCTCTGGCAGCAGGATCATAATCACAACAAGAGACAAGCATTTGCTAGCCACTCATGGGATTGTAAAATCATATGAGGTTAAACAGTTGAGTGATGATAAAGCTCTTGAATTGTTTAGTTGGCATGCCTTTCAAAAAAACAAAATTGATTCAATTTATGTGGATATTTCAAAAAGCGCAGTTTCTTATGCTCATGGCCTTCCATTGGCTTTGGAGGTGATAGGTTCTCACTTGTTTGGCAAAAGTTTAGATGTATGGAAATCTGCATTGGCCAAATATGAAAGAACTCCTCATCAAGATATCCATAAAACACTTCAAATTAGCTATGATGATTTGGACAAAGATGAGAAGGGAATTTTTCTTGACATTGCTTGTTTCTTCAATTCTTACGAAATACTCTATGTCAAACAAATACTGTACTTACATGGTTTTCAAGCGGAAGATGGTATTCAAGTGTTGATTGACAAATCTCTCATAAAGATTGACCCCAATGGTTTCGTGAAGATGCATGACTTAATTCAGGTTATGGGCAGAGAAATCATTAGGCAGGAATCAGAATTGGAGCCTGGCAGACGCAGTAGATTATGGTTTAACGAAGACATTGTTCATGTTTTGGAAGATGATACGGGAACTGATACAATTGAAGCTATAATCATCAACCTGTGCAAAGACCTAGAAGTGAAGTGGAGTGGAAAAGCCTTCGAGAAGATGAAAAACCTGAGAATTCTTATAATCAGAGATGCACGCTTTTCTAGAGGACCTCAGAATCTACCAAATAGCTTGAGAGTGCTTGATTGGAGTGGGTATCCATCACTGTCTTTACCATCTGATTTTAATCCAAAGAATCTTGTGATACTTAGTCTGCCTGAAAGTTGCCTTAAATTATTTAGACCGCTCAAGGTGTTTGAGTCATTGAACTTTATGGATTTTGAAGATTGCAAGTTCTTAACTGAACTACCTAGCTTAAGTGGTGTACCTAATTTGGGGGCACTTCATCTTGATAATTGCACTAATTTAATTACAATTCATGGTTCGGTTGGATTTCTGGATAGGCTCGTGTCATTGAGTGCTCAAGGATGCACGCAGCTAGAAATATTGGTACCCTCTATCAACTTGACATCTCTAGAAACTCTGGATCTAAGAGGTTGCTCACGTCTTGTGAGCTTCCCAGATGTTTTGGGAATAATGGAGAATATAAGAGATGTTTATTTAGACCAGACTGCCATACGTGAATTGCCATTTTCAATTGGAAATCTTGTGGGGCTCCAACGATTGTTCTTGAGGAAATGCCAAAGCTTCTTCTGCCTACCAAGTAGCATCCATAGATTGCCTAAACTTGAGATAATAACAGCTAATGGTTCTAGGGGATTTCTCTTATCTGAGGATAAAGAAAAAGTGTGCTCAAAAGTGTTTCCAAAAGTCATGGCTATTTATATTGGAGGCACTTGGTTCTTCCTTGATGTGTATTATCTAAATATAAGCCCCTATAATGTCATAGAAGTATGTAGACCTTCGCCTCCCCATGTTGATGGACTTGTGGAATCTGATTTTCTATGGTCTAAACTGATTAGCGGAGCGAGGGAAATGTCGATGTGTTTTTGGTTCCGGAACAAATTCCCCAAGATAGCTCTATTTTGTAATACAGAACCTGGCATTAATCAAGACAATGCGGTGTTGGATTTCAAGCTCAGTGTAGTCATCAATGGCACTAAGCAATTCAGTTCTTCATGTAACTACATATTTCATAGACCAGGAATGAGGAATATAATGCTTTGCTGTGATCTACAATGCAAGGTGGAGAGTGTATTTTCAGAGCATGAATGGAATAAGGTAGAGATTTTTTGGGAGTTAGAATACCCCATGCCATGTGATTCTGAAAGGGTGGGGGCCACAATGAGGATTCCAAAACGGTGCTTCATTTATCTCCATAGAGGAAACAAGGAGGAGGATTTCAAATTAGAAAATTCCTGA 2946 0.391 MTQLTLPHPSSFTYEWIYDVFLNFRGVDTRKNFTGNLYNSLHERGIHTFIDDEGLNKGEEITPSLLQAIQDSRIFIAVFSKNYASSTYCLKELVMILECSKAQGRLFWPVFYDVDPSQVRHQSGAYAEALAKHEERYKDDKDMVKEWRKALFQAANMSGSHFLLGSQSEYQFIRKIVEEVSTKINRCPLYVADKPVALESRVLEVTSLLGLGSDEGVNMVGIHGIGGIGKSTLARAVYNFIADQFDGFCFLADIRERAIDNHGLVQLQETLLSELLGEKDIKVGDVNRGIPIIKRRLHRKKVLLILDDVDKLKQLKVIAGGHDWFGSGSRIIITTRDKHLLATHGIVKSYEVKQLSDDKALELFSWHAFQKNKIDSIYVDISKSAVSYAHGLPLALEVIGSHLFGKSLDVWKSALAKYERTPHQDIHKTLQISYDDLDKDEKGIFLDIACFFNSYEILYVKQILYLHGFQAEDGIQVLIDKSLIKIDPNGFVKMHDLIQVMGREIIRQESELEPGRRSRLWFNEDIVHVLEDDTGTDTIEAIIINLCKDLEVKWSGKAFEKMKNLRILIIRDARFSRGPQNLPNSLRVLDWSGYPSLSLPSDFNPKNLVILSLPESCLKLFRPLKVFESLNFMDFEDCKFLTELPSLSGVPNLGALHLDNCTNLITIHGSVGFLDRLVSLSAQGCTQLEILVPSINLTSLETLDLRGCSRLVSFPDVLGIMENIRDVYLDQTAIRELPFSIGNLVGLQRLFLRKCQSFFCLPSSIHRLPKLEIITANGSRGFLLSEDKEKVCSKVFPKVMAIYIGGTWFFLDVYYLNISPYNVIEVCRPSPPHVDGLVESDFLWSKLISGAREMSMCFWFRNKFPKIALFCNTEPGINQDNAVLDFKLSVVINGTKQFSSSCNYIFHRPGMRNIMLCCDLQCKVESVFSEHEWNKVEIFWELEYPMPCDSERVGATMRIPKRCFIYLHRGNKEEDFKLENS 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1451g00003 981 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Gabi1451g00003 981 Pfam TIR domain 18 185 IPR000157 GO:0007165
Gabi1451g00003 981 Gene3D - 354 438 IPR042197 -
Gabi1451g00003 981 SMART AAA_5 216 355 IPR003593 GO:0016887
Gabi1451g00003 981 SUPERFAMILY L domain-like 543 786 - -
Gabi1451g00003 981 Gene3D - 183 347 IPR027417 -
Gabi1451g00003 981 Coils Coil 971 981 - -
Gabi1451g00003 981 Pfam NB-ARC domain 213 437 IPR002182 GO:0043531
Gabi1451g00003 981 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 772 IPR044974 GO:0006952
Gabi1451g00003 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Gabi1451g00003 981 PRINTS Disease resistance protein signature 296 310 - -
Gabi1451g00003 981 PRINTS Disease resistance protein signature 219 234 - -
Gabi1451g00003 981 PRINTS Disease resistance protein signature 695 711 - -
Gabi1451g00003 981 PRINTS Disease resistance protein signature 389 403 - -
Gabi1451g00003 981 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Gabi1451g00003 981 SMART till_3 17 157 IPR000157 GO:0007165
Gabi1451g00003 981 Coils Coil 130 150 - -
Gabi1451g00003 981 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Gabi1451g00003 981 Gene3D - 17 182 IPR035897 -
Gabi1451g00003 981 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Gabi1451g00003 981 Gene3D Ribonuclease Inhibitor 693 783 IPR032675 -
Gabi1451g00003 981 Gene3D Ribonuclease Inhibitor 552 692 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1451g00003 Gabi-Chr1451 122969 126849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1451g00003 7 778 WRKY Transcription Factor Family AT4G12020 34.340 4.76e-104 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1451g00003 - - mtr:11441658 1287.71