Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1449g00010 ATGCAGCTCAATCGCCTCTGTATTGTTTTACCATCAAATTCTGGTGAAATGGAGCAACCTGAAATGGGTTCACAACAATCCTTTCAATCTGCAAAGAAACAAATTAAGGTCAAACAGTGTCATAGAGTTTGTGGGGTGCAAGTTCTTGCATTGCTTCGCAGTTCTTTGAGCAGGTTATATGAGTCAAGGTGCTGGAGAACTTGCCAACATAGAGTGCAGAAAGAAAAGAAGAACTCTGATGTGTTTCATGACATGGATGGTGTGCAAGTTTCTCTCAAGATTGGTAGGGAGAATCCAAGGATATTCAGCTATGCAGAGCTTTTCATAGGGTCCAATGGTTTCAGAGAAGATCAAGTTCTTGGGAGTGGAGGATTTGGCAAAGTGTACAAGGCTGTTTTACCAAGTGATGGAACTGTGGTTGCTGTGAAATGCTGCTTAGCAGAGAAAGGGAAACAATTTGAGAAGAGTTTTGCAGCAGAGTTAACAGCTGTAGCAGATCTTCGTCACAAGAACCTTGTCAGGTTGAGGGGTTGGTGTGTTCATGATGATCAGTTACACCTTGTTTATGACTACATGCCGAACCTCAGCCTCGACCGCATACTCTTTCGCCGGCTGGAGAACTTGAAGGCTGAGCCTCTTGATTGGGGACAAAGAGTGACAATTGTCAAAGGTTTGGCAGCTGCATTGTATTATCTCCATGAACAATTAGAAACTCAAATCATTCACAGGGATGTCAAAACTAGCAATGTGATGCTTGATTCCCATTACAATGCTCGGTTGGGTGACTTTGGCATGGCAAGGTGGCTAGAACATGAGCTTGAGTTTAAGAATAGGAAAACATCAACCAGAATTGATTATTTCCGGTTGGGAGATACATCAAAAATTGGTGGTACAATTGGGTATCTTCCACCTGAAAACTTGCAGAAACCAAGCAACGCTACCTCCAAATCTGATGTTTTCAGCTTTGGGATAGTTGTGCTAGAGGTGGTATCTGGAAGGAGAGCAATAGATCTCACACACCCAGATGATCAAATCATTCTGCTTGATTGGATCAGAAGGCTTTCTGATGAAGGGAAGCTTCTGGAGGCAGCCGATACTCGGCTACCGGATAGATCCTACAAGCTTTCTGAGATGCAGCATCTCATTCACATAGGCCTACTTTGTACACTCCATGAACCACAATTAAGGCCAACCATGAAATGGATTGTGGAAGCACTTTCTGATCTTTCTTTCAAACTTCCAAAACTCCCTTCATTTCTCTCCCACCCTTTATACATCTCTTTGTCTTCCCCATCTGAGACTAGTCCCAGCAGCACAAGTGGCACTAGCTATGCCACAGAGAATGCTAGCATAATCACCAACTATACTTCATCCAACTATGTAACAGCCATAGGGGAAACTATGTATGTAACTGCTGAACACAAAAACAGTGAAATCATCTCTTCAAAGAGCATGCATCACCAGCCACAATTTCCTGTGGTTGAAACTCCAAGGGAAATATCATTCAAGGAGATTGTTTCTGCTACAGATAACTTTTCAGAGTCAAGAAGGGTGGCAGAGCTAGACTTTGGGACTGCTTATCATGGCATCCTTGATGATAGTTGCCATGTTTTGGTGAAACGCTTGGGGATGAAGACTTGCCCTGCATTGCGTGATAGATTTTCCAATGAACTCCGGAATCTAGGAAGGCTTCGCCATAGGAATTTGGTGCAACTTCGTGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTGTTTACGATTACTCAACAAGTAGAATTCTCAGTCAACAACTCCTCCATCATAACAATAGTAAAATTGGGTGTTCTGTCCTACAATGGCATCACAGATACAACATAGTGAAAGCACTTGCCTCTGCAGTTCTCTATCTTCATGAGGAATGGGAGGAACAAGTGATTCACAGAAACATTACCTCCTCAGCTGTCATTCTTGAACCAGATATGAACCCAAGACTCAGCTGTTTTGCTCTAGCTGAATTTTTGTCAAGGAATGAGCAGGGTCATCACACAATCACTGACACAAGCAAATCAGTTCGCGGCATTTTCGGTTACATGTCACCGGAATATGTGGAATCCGGTGAAGCAACCTCTGCGGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTCAGTGGACAGATGGCAGTGGACTTCCGGCAGCCAGAGGTACTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGACCATTGAAAGAGTTAGCAGACATAAGACTCAATGGAGAGTACAATAACAAAGAGCTGATGAGATTGGTAAGATTAGGAATTGCATGCACCCGTTGTGACCCACAATTAAGACCAAGCATGAGACAAATAGTAAGCATCCTTGATGGCAATGACAAATTACTTATCCAGAGAAACAAGGAAAGTAGGGAAGAATGGAGGCAAAGAAATGCTAGTTCTTTGTCAATGATTAAAAGAATCCAAGCTCTAGGAATACAGTAA 2493 0.4284 MQLNRLCIVLPSNSGEMEQPEMGSQQSFQSAKKQIKVKQCHRVCGVQVLALLRSSLSRLYESRCWRTCQHRVQKEKKNSDVFHDMDGVQVSLKIGRENPRIFSYAELFIGSNGFREDQVLGSGGFGKVYKAVLPSDGTVVAVKCCLAEKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVHDDQLHLVYDYMPNLSLDRILFRRLENLKAEPLDWGQRVTIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEFKNRKTSTRIDYFRLGDTSKIGGTIGYLPPENLQKPSNATSKSDVFSFGIVVLEVVSGRRAIDLTHPDDQIILLDWIRRLSDEGKLLEAADTRLPDRSYKLSEMQHLIHIGLLCTLHEPQLRPTMKWIVEALSDLSFKLPKLPSFLSHPLYISLSSPSETSPSSTSGTSYATENASIITNYTSSNYVTAIGETMYVTAEHKNSEIISSKSMHHQPQFPVVETPREISFKEIVSATDNFSESRRVAELDFGTAYHGILDDSCHVLVKRLGMKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVVYDYSTSRILSQQLLHHNNSKIGCSVLQWHHRYNIVKALASAVLYLHEEWEEQVIHRNITSSAVILEPDMNPRLSCFALAEFLSRNEQGHHTITDTSKSVRGIFGYMSPEYVESGEATSAADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLNGEYNNKELMRLVRLGIACTRCDPQLRPSMRQIVSILDGNDKLLIQRNKESREEWRQRNASSLSMIKRIQALGIQ 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1449g00010 830 SUPERFAMILY Protein kinase-like (PK-like) 98 440 IPR011009 -
Gabi1449g00010 830 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Gabi1449g00010 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Gabi1449g00010 830 Gene3D Phosphorylase Kinase; domain 1 86 191 - -
Gabi1449g00010 830 Gene3D Phosphorylase Kinase; domain 1 470 588 - -
Gabi1449g00010 830 ProSiteProfiles Protein kinase domain profile. 114 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1449g00010 830 Gene3D Transferase(Phosphotransferase) domain 1 192 412 - -
Gabi1449g00010 830 Gene3D Transferase(Phosphotransferase) domain 1 594 818 - -
Gabi1449g00010 830 SMART serkin_6 114 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1449g00010 830 Pfam Protein tyrosine and serine/threonine kinase 517 792 IPR001245 GO:0004672|GO:0006468
Gabi1449g00010 830 PANTHER - 52 408 - -
Gabi1449g00010 830 ProSiteProfiles Protein kinase domain profile. 512 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1449g00010 830 FunFam Receptor like protein kinase S.2 192 412 - -
Gabi1449g00010 830 SUPERFAMILY Protein kinase-like (PK-like) 490 793 IPR011009 -
Gabi1449g00010 830 Pfam Protein kinase domain 115 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1449g00010 830 FunFam Receptor like protein kinase S.2 590 815 - -
Gabi1449g00010 830 FunFam Receptor like protein kinase S.2 472 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1449g00010 Gabi-Chr1449 181047 183621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1449g00010 502 798 Receptor kinase-like Gene Family AT3G53810 37.748 7.50e-54 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi1449g00010 Pkinase 7.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1449g00010 - - gmx:100796108 1374.38