Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1449g00005 ATCTACACTGATGCAGATTGGGCAGGCTCATCAGTAGACAGAAGATCTATTTTGCTCGACTTCAGAGGAAAAATGAAAGATTTTGCATTAACCCGTAGCAAGAAAGATTTGAACTTGCTGAGCCTCTCAGATGGTGGATCATCCAAGAGGAGACAGAGGGTTGGTGAACCTGATATGGTTTTCTTGGGAGAATTTTTTTGTGAAAGTGAAGGCAAAAGGGTCTCTGTTTCAAGTAGTGAAGGTACAGGGAAAAGGGAATCTGGATCTCGAGCTTCATCATCTATATCCAAGGGGAAACAGAGGAGCAAAAGTGGTTTGAAGGGTAAAAGGGTGGATGAATCCGATTGCGAGGTTGAAGGAGAATTGGCCTCTGTTTCTGTTAGTAAACGTCTGAGGGAATCGTTTGATGATGTGCCTGAACCTATAGAAGTGATTGAAATTGATGAGAGTGATGATGATAATGGTACTGAAGAGGGATTGAAGCATTCTGAGAAGAGGTTTCAGGATGTTAAAAGGGAGGAAGACAAGAATGAAGAAGGTAAAGGAAGTTATATGTCTGCTGATAAAGTTGAAAACTTTGGCAATGATGGTTGTGGTTTTGGAGCTGAAAACCCAATTACATTTGATTCAGATGGAGATAATTTGAGTGAGGAAGAACATGGTTCAGATGGAGATAATGAGAGTGAGGAAGAACATAGTTCATATGGAGATAGCCAGAGTGAGGAAGAAGATAGTACAGATGCTGATTATCTTACGCCTTCATCGGAGGAGGGCGAGGATGAAGAGACTAGTGATGAAGATTTTCAAGTTGATAATATGAGTGAAAGCAGTGAAGTTAGTTTTACCGCTTGTGATGATGAGGAGAAGATGATGAAGAAGAAGAAGAAGCTGATGACTAAAGTGGAGACTGAAAGTAGTGGAATTTGCAGAAAAAATGATGGAATAAGGAAAGGTAAGAAGATAGAGGAGGGAGAGCTTTCGAATACTCCATCGTCTGTGAATAATAATGAATGTGGTGAACAAGATAAAGATGAAGGGAAGAAATCAGATTCTGTTGAAGTGGTATTGAGTGGATGTTCTTCCAAGCTGTATGAAGAGAAAGCAAAGAAACAAGATGAAAAGAGACTGAAAAGAACAGCTGAAAATGTCGATGCTGATGTTGAAGTCTTGGGTGGTTATCTTTCTGAAGATGAAGCACAAAAGGGTACTAAGGAACAAGATAGAGATTCAAATAAGTTGAATAAGAGAAAGAAAAATGATGCCAACAACAATGCTAATGGAAAAGAGCATCATGACAAAGATACAGGTGTGAGAGGTGTTTCTTCTTTGCTAAGAAACAAAGAGAAGATAGGAGATTCAGCTAAAGTTAAAATCATGGAGAACAATAAGAGAAAGGAGTATAAAGATTGGGTAAGAATCAGTAATCGTGAAAGGAAGGTTTTTGTGGATGATGAAATTGGTCACGAAGATGGGTTGCATAAAATGCATAGGATGCCATCTAGGTCAAAGGAGGTACATTTAATTCAACTCCTTTCTGAATGCTTTAGGGAAAAGCCTGATTCGGTTAAAGATGATTCAAATGTTGTGGAAGAAAAGGTTGATGGTGTTCATCAGCCACCACTGAAAAATTGGTTGGGCTTTAAGAAGCCTGAACCGGTGGTGGAAAAATCTGAGTCTGAGAAGGAGTTGGATATGTTGTGGGAAGAAATGGAAACATTGCTTAGACTTGAAAAAATAAATTCCCAGATTGGAAGTGAAGGGACAAATGAAGCAAGAGAAAACACACAAAGTCCAGCCTTCGTTTGTAAGCATGACATATATCTTGAGGAGCAGATTGGGTTATTATGCAGATATTGTTCTTGGGTTCAGATTGAGATCAAGTACATGACGCCCCCAATTGCTCCGGAAAGATCACGAAAAAGAAAATCATCTCTGGTAGAAAATGTCTCAGACTTTGATGGGGCTAAGTTTAACGTTTCTGTTGGTGACTCAGAAGCTGCTTGCTCTCTTAATAAAGGCACGGTTTGGGACCTTATTCCTAACATCAAACAAAGCTTATACAATCATCAACAAGAAGGTTTAGAGTTTATCTGGACAAATTTGGCAGGAACCATTGACCTTCATGAGTTGAAGAGTGCTGATCCTTGTTGCCCTGGTGGATGCATTGTTTCTCATGCTCCTGGAACTGGAAAAACAAGGTTGACCATGGTGTTTCTTCAGACATATTTGGAAGTATTTCCAAAATGCCAACCTGTTATTATTGCTCCTGCTAACATATTGCTTACTTGGGAAGATGAGTTCAAAAAATGGGACATGAAAATTCCATTCCACAACCTGAACAATTCTGAATTATCTGGAAAAGAACATGCTGATGCCATGAACGATATTGATTGGTCTAGAAATCTATACCAGAATAAGGACGCCATACGTATGGTAAAGCTGTATTCATGGTTCAAAGAAAAGAGCATTCTAGGAATCAGCTACCATTTGTATGAGAAGCTTGCCGGCGATGTCGAAACCAAAAGGAAAAATAGGAGTATGAAAAAAGAGAAGAAATATGCACCTGCAAAAGTAAATGGAGTGATTATGGGAAAGGTTCTGCGTGACATTCCTGGTTTGTTAATTTTAGATGAAGGGCACACCCCAAGAAATCAGGGTAGTCTTATTTGGAAGGTTCTGTCAGAAATTCAAACTCCTAAGCGAATTATCCTTTCAGGGACTCCTTTTCAGAATAATTTTCTGGAACTTTATAATACATTGTGCTTAGTGAAACCTTCTTTTCCTGAGAAGATACCTCAAGAACTGAAAAAGTTCTGCCAAAGTAGACTAAAGAAGGAAAAGAAAGCATCTAAAAATGGTAGTTGGGAACCGGTTTCTTCTGGAAATCCTGCTGATGAAAAAATAAACAAGTTGAAATTGCTTATGGATCCTTTTGTTCATGTTCACAAAGGTAGTATTCTTCAAAAGAACCTTCCTGGATTGAGAGAATGTGTTGTGACTCTGAAGCCAGACAATTTGCAGAAAGAACTTCTACATAGCATTGAATCTTCTCAGAACTCATTCAAATTTGAACACAAGTTGGCTTTGGTGTCTGTTCATCCATCACTTTTCCTCTGCTGCTCTCTATCAAAAAATGAAGAATCTGTTGTTGACAAGGATGAGTTGGAAAAGCTTAAAATGAACCCGTTTGTAGGTGTCAAAACAAGATTTTTGGTGGAGTTTGTGCGGTTGTGTGAGGTATTTAAAGAGAAAGTTCTTGTTTTCAGCCAATACATTGACCCTTTGTCTTTAATTATGGACCAACTCAAGTCAGTTTTTAATTGGTCTGAGGGGAAGGAAGTGCTTTATATGAATGGCAAGCTTGATCAGAAGCAAAAGCAGTTCCTGATTCATAGCTTCAATGATGCAAATAGCCAAGCAAAGATATTACTTGCATCTACAAAAGCATGTTCTGAGGGAATTAACTTAATTGGAGCTTCAAGGGTTGTGCTTTTGGATGTTGTTTGGAATCCCTCAGTGGAAAGACAAGCTATTAGCCGAGCATATAGACTTGGACAAAAGAGAGTTGTTTACACTTATCATCTCATCACACAGGGAACCACTGAATGTACAAAGTATTGTAAACAGGCAGAAAAGGACAGGTTATCTGAACTGGTTTTCTCAGCTAAAAATACTGAAAATGATAAGTCAGAGAGTTGTGAAGCAATTTTTGAGGATGAAGTTCTTGATCGGCTGGTTCGGCATGACAAACTCAAGGACATGTTTGGTGACTGCGTGGTACAGCCAAAGGAGAGAGAGATTTAG 3804 0.3891 IYTDADWAGSSVDRRSILLDFRGKMKDFALTRSKKDLNLLSLSDGGSSKRRQRVGEPDMVFLGEFFCESEGKRVSVSSSEGTGKRESGSRASSSISKGKQRSKSGLKGKRVDESDCEVEGELASVSVSKRLRESFDDVPEPIEVIEIDESDDDNGTEEGLKHSEKRFQDVKREEDKNEEGKGSYMSADKVENFGNDGCGFGAENPITFDSDGDNLSEEEHGSDGDNESEEEHSSYGDSQSEEEDSTDADYLTPSSEEGEDEETSDEDFQVDNMSESSEVSFTACDDEEKMMKKKKKLMTKVETESSGICRKNDGIRKGKKIEEGELSNTPSSVNNNECGEQDKDEGKKSDSVEVVLSGCSSKLYEEKAKKQDEKRLKRTAENVDADVEVLGGYLSEDEAQKGTKEQDRDSNKLNKRKKNDANNNANGKEHHDKDTGVRGVSSLLRNKEKIGDSAKVKIMENNKRKEYKDWVRISNRERKVFVDDEIGHEDGLHKMHRMPSRSKEVHLIQLLSECFREKPDSVKDDSNVVEEKVDGVHQPPLKNWLGFKKPEPVVEKSESEKELDMLWEEMETLLRLEKINSQIGSEGTNEARENTQSPAFVCKHDIYLEEQIGLLCRYCSWVQIEIKYMTPPIAPERSRKRKSSLVENVSDFDGAKFNVSVGDSEAACSLNKGTVWDLIPNIKQSLYNHQQEGLEFIWTNLAGTIDLHELKSADPCCPGGCIVSHAPGTGKTRLTMVFLQTYLEVFPKCQPVIIAPANILLTWEDEFKKWDMKIPFHNLNNSELSGKEHADAMNDIDWSRNLYQNKDAIRMVKLYSWFKEKSILGISYHLYEKLAGDVETKRKNRSMKKEKKYAPAKVNGVIMGKVLRDIPGLLILDEGHTPRNQGSLIWKVLSEIQTPKRIILSGTPFQNNFLELYNTLCLVKPSFPEKIPQELKKFCQSRLKKEKKASKNGSWEPVSSGNPADEKINKLKLLMDPFVHVHKGSILQKNLPGLRECVVTLKPDNLQKELLHSIESSQNSFKFEHKLALVSVHPSLFLCCSLSKNEESVVDKDELEKLKMNPFVGVKTRFLVEFVRLCEVFKEKVLVFSQYIDPLSLIMDQLKSVFNWSEGKEVLYMNGKLDQKQKQFLIHSFNDANSQAKILLASTKACSEGINLIGASRVVLLDVVWNPSVERQAISRAYRLGQKRVVYTYHLITQGTTECTKYCKQAEKDRLSELVFSAKNTENDKSESCEAIFEDEVLDRLVRHDKLKDMFGDCVVQPKEREI 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1449g00005 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 712 926 IPR014001 -
Gabi1449g00005 1267 Gene3D - 992 1261 IPR027417 -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 240 272 - -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 363 382 - -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 398 438 - -
Gabi1449g00005 1267 Pfam Helicase conserved C-terminal domain 1077 1185 IPR001650 -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 155 185 - -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 213 239 - -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 387 452 - -
Gabi1449g00005 1267 Pfam SNF2-related domain 695 1022 IPR000330 GO:0005524|GO:0140658
Gabi1449g00005 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 939 IPR027417 -
Gabi1449g00005 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1073 1230 IPR001650 -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 70 352 - -
Gabi1449g00005 1267 SMART helicmild6 1100 1185 IPR001650 -
Gabi1449g00005 1267 SMART ultradead3 682 934 IPR014001 -
Gabi1449g00005 1267 Gene3D - 664 970 IPR038718 -
Gabi1449g00005 1267 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 286 1266 IPR044567 GO:0080188
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 72 101 - -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 140 154 - -
Gabi1449g00005 1267 Coils Coil 284 304 - -
Gabi1449g00005 1267 MobiDBLite consensus disorder prediction 282 324 - -
Gabi1449g00005 1267 CDD SF2_C_SNF 1064 1196 - -
Gabi1449g00005 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 872 1225 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1449g00005 Gabi-Chr1449 54413 62476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1449g00005 1083 1237 RAD5 or RAD16-like Gene Family AT5G43530 37.419 3.08e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1449g00005 SNF2_N 3.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1449g00005 K10875 - gmx:100812737 1094.34