Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1449g00001 ATGACTTTAGCCCAAGATAAGGACCATGAAGTTCGTAACTTTGATGAACTGTTGTGGAACGAGTCTGGTTTTTCCCCTTCCGAAGATGGTTCCTTTGCAGACCCACTTGATGTCCCACAAGACCCTCTAGAAAATTTGGAATGGTACCCTAATCTGTATGAAGACTTGGACTTTGGTTCAATTCTCAAGAATGATTCCAAGTTCATTGACACTGATGTAGAAGAAAGTTTCGAAACAAAGGCTAAACTGGAGCAACCAGGTAAGGGAAAAACACAACAAAATTTGTCTTCTGATTTGTCAAATATTCAGATCAACCCTAATTTATACGAAGACTTGGACTTTGGTTCAAACCAGAAGAATAATTCCGAGTTCATTGACACCGATGGAGAAGAAAATTTTGAAACAAAGGCTAAATTCGAGAAACCAGGCAAGGAAAAAACACATCCAAATTTGTTGTCTGCTTTGTCAAATATGCAAATCAACCCTAGTTTATATGAAGAAGACTTGAAATTTGGTTTAAATCTGAAGAATAATTCCCAGTTCATTGACACTGATGGAGAAGAAAATTTGGAAACAAAGTCTAAATTCCAGCAACCTGGCAAGGAAAAAACACAACAAATTTTGTTTGCTGATTCGTCAAATATCCAAATCAACCCTAATAGTCAAAAGAAGTCAAGTTTTGTTCCGAAGCAGCCTAGAACAAAAAAATCTAGAAGAAGACGGATACTTATATTTGGCGGATTATGGTTACCGTCTAAATCTGGGGTAGATTATCAGGATTCAAAGCCAAATCAAAGTAATATTATTACGGAGAAAAGTTGTAGTCATTGTGAGAGCAAACATACTTCTCAATGGAGGGCTGGTCCTTTGGGGCGAAATACTTTATGCAATGCCTGTGGTTTGCGATACAAGTTAGGAAGGTTGTTACCAGAGTATAGACCTGCTGCAAGTCCAACTTTTGACGTCAAGAAGCATTCAAATTTTCACAAGAAGATACCTCAAAATAGAGGAAAAAATATCAGTTAG 1026 0.3723 MTLAQDKDHEVRNFDELLWNESGFSPSEDGSFADPLDVPQDPLENLEWYPNLYEDLDFGSILKNDSKFIDTDVEESFETKAKLEQPGKGKTQQNLSSDLSNIQINPNLYEDLDFGSNQKNNSEFIDTDGEENFETKAKFEKPGKEKTHPNLLSALSNMQINPSLYEEDLKFGLNLKNNSQFIDTDGEENLETKSKFQQPGKEKTQQILFADSSNIQINPNSQKKSSFVPKQPRTKKSRRRRILIFGGLWLPSKSGVDYQDSKPNQSNIITEKSCSHCESKHTSQWRAGPLGRNTLCNACGLRYKLGRLLPEYRPAASPTFDVKKHSNFHKKIPQNRGKNIS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1449g00001 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 270 329 - -
Gabi1449g00001 341 ProSitePatterns GATA-type zinc finger domain. 274 299 IPR000679 GO:0006355|GO:0043565
Gabi1449g00001 341 Gene3D - 269 339 IPR013088 GO:0006355|GO:0008270
Gabi1449g00001 341 SMART GATA_3 268 318 IPR000679 GO:0006355|GO:0043565
Gabi1449g00001 341 MobiDBLite consensus disorder prediction 319 341 - -
Gabi1449g00001 341 ProSiteProfiles GATA-type zinc finger domain profile. 272 305 IPR000679 GO:0006355|GO:0043565
Gabi1449g00001 341 PANTHER GATA TRANSCRIPTION FACTOR 81 337 - -
Gabi1449g00001 341 Pfam GATA zinc finger 274 308 IPR000679 GO:0006355|GO:0043565
Gabi1449g00001 341 FunFam GATA transcription factor 269 318 - -
Gabi1449g00001 341 CDD ZnF_GATA 273 324 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1449g00001 Gabi-Chr1449 15891 16916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1449g00001 212 336 C2C2-Gata Transcription Factor Family AT3G45170 45.600 2.91e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1449g00001 GATA 1.8e-13 CL0167