Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1443g00003 ATGAAGATAGCGCTTGAGAGGAATTTCACCAGGGGACGTAAATCAGAACAAGTACAGGCTGCTTGTCTCTATATTGCTTTCCGGGAAAATAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTGCTAGGTGCAGTTTTCTTGCAGCTTTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCCAGTCTTTTTATTTATAAATTCACGAATAATTTGTTAAAGAAAAGGAATGTGCCTGTTTCTGAAACTGCGCTGAGTATTATTGCTAGCATGAAACGTGACTGGATGCAGACCGGGAGGAAGCCCAGTGGATTATGTGGTGCAGCAATATACATGTCTGCTCTTGCACATGGTTTCAAGTGCTCCAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACTAAGCGGTTGGTAGAATTTGAGAATACAGAGTCTGCTAGCTTGACAATTGAGGAGTTGAATACGATGGCAAAAGAGCATGAAAATAATCCAATTAAAATACCAAATGGTGAGTTGAACAAATGTACTTCAAAAGATCTACTATGTGAACACAAGGATAGTGCTGTGCCCCATTTCGCCCTTGGTTTATGTGAAGCATGTTACAAGGAATTTGATAAACTCTCTGGAGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCATGCTGAGAGAGAGAGAATGACAAAATCACTCTCTGAGGAAAGTGCCAATAAATCACATGATTTGGTGGAAGCATCAAATGGTGCATGTGAGAGCCAAATAGAAGAATTACATGCCTCTGAACCAGAAACTATTGGGGCTAATGAGCTCCATGGTATAAAAGATGGTGACCATGATGAGTCTCATAGAGAAGATGATATGAACGCAAAAGCTCATGATGAATCAGAAAGTCTTTCTGATATTGATGACCAGGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCATTTCAAGAAGATTATATGGGAAAATATGAATAGAGAGTATCTTGAGGAACAAGCAGCCAAGGAAGCAGCTGCAGCAGCCGCTAAGAAAGCTTTTGAGGCAAATTTCCAAAACTGTTCTGACGATTTGCTAGCAGCGAGAGAACTTGCTGCATCTGCTGCTGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAACAGAGGCGAGCTCAAGAGACAAAAAATTCGGGTCCTGCTCAATCTGCTGTAGAGGCCACTCGCCAAATGTTGAGAACGAAGAGGCTGAGCTCCAAAGTCAATTATGATCGCTTGGAAGAATTATTTAATGAACCTGTGGCTCCAGAGAATCCCAAGAAAGTACGATTTGAGCTACCCTCTGATAATCATGATAATTTTGAGTCAAAGTTAGAGGACAAACCAAAGGATGATGAACCAGGTTCAGCTGACGAATTTGAGGATGGTGATATGGACGGAGAATATGAAAATACTTTGTATCAAGAAAATGCAGACGAGACATATAACTATGAGGATGATGGTTATAACTATGATGATGATTACTGA 1563 0.405 MKIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKFTNNLLKKRNVPVSETALSIIASMKRDWMQTGRKPSGLCGAAIYMSALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTESASLTIEELNTMAKEHENNPIKIPNGELNKCTSKDLLCEHKDSAVPHFALGLCEACYKEFDKLSGGLGGGLDPPAFQHAERERMTKSLSEESANKSHDLVEASNGACESQIEELHASEPETIGANELHGIKDGDHDESHREDDMNAKAHDESESLSDIDDQEVDGYLHNEEEKHFKKIIWENMNREYLEEQAAKEAAAAAAKKAFEANFQNCSDDLLAARELAASAAAAVAKSRKEMKQRRAQETKNSGPAQSAVEATRQMLRTKRLSSKVNYDRLEELFNEPVAPENPKKVRFELPSDNHDNFESKLEDKPKDDEPGSADEFEDGDMDGEYENTLYQENADETYNYEDDGYNYDDDY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1443g00003 520 MobiDBLite consensus disorder prediction 287 316 - -
Gabi1443g00003 520 Gene3D Single helix bin 295 360 - -
Gabi1443g00003 520 MobiDBLite consensus disorder prediction 444 520 - -
Gabi1443g00003 520 Pfam Brf1-like TBP-binding domain 318 443 IPR011665 -
Gabi1443g00003 520 CDD CYCLIN_TFIIIB90_rpt2 71 161 - -
Gabi1443g00003 520 SUPERFAMILY Cyclin-like 2 64 IPR036915 -
Gabi1443g00003 520 MobiDBLite consensus disorder prediction 505 520 - -
Gabi1443g00003 520 MobiDBLite consensus disorder prediction 450 480 - -
Gabi1443g00003 520 MobiDBLite consensus disorder prediction 242 259 - -
Gabi1443g00003 520 MobiDBLite consensus disorder prediction 242 323 - -
Gabi1443g00003 520 MobiDBLite consensus disorder prediction 396 419 - -
Gabi1443g00003 520 SUPERFAMILY Cyclin-like 73 170 IPR036915 -
Gabi1443g00003 520 Pfam Transcription factor TFIIB repeat 2 58 IPR013150 GO:0017025
Gabi1443g00003 520 Pfam Transcription factor TFIIB repeat 70 160 IPR013150 GO:0017025
Gabi1443g00003 520 FunFam Cyclin/Brf1-like TBP-binding protein 310 360 - -
Gabi1443g00003 520 FunFam Transcription factor IIIB subunit 74 163 - -
Gabi1443g00003 520 Coils Coil 161 181 - -
Gabi1443g00003 520 Gene3D - 1 66 - -
Gabi1443g00003 520 Gene3D - 74 166 - -
Gabi1443g00003 520 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 433 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1443g00003 Gabi-Chr1443 118926 141296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1443g00003 4 427 Inorganic Solute Cotransporters AT2G01280 43.151 5.42e-88 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1443g00003 K15196 - gmx:100789154 636.721