Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1443g00002 ATGGTGCATTGTGATCACTGTTGTAAAAATGTTCCCGGGTTTCGACTCGATGATGGTCCCTTATGCTGTAACGTATGTGGGAAGGTGTTGGAAGACTTCCATTTTTCTCAGGAGCCCACCTTCGTGAAAAATTCGGCAGGGCAGAGCCAATTATCTGGCCGTTATGTAAGAACAATTCAAAGTGAATTCTCTGCTTCACGCCAAAGGACTTTAGACAGAGCTTATGATGATATCAAATATTTAAGTTTCAGCCTTGGAGTGAATGATGATAATGTAGCCAACCAAGCTTTGGCCTTTTATAGAATAGCGCTTGAGAGGAATTTCACCAGGGGACGTAAATCAGAACAAGTACAGGCTGCTTGTCTCTATATTGCTTTCCGGGAAAATAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTGCTAGGTGCAGTTTTCTTGCAGCTTTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCCAGTCTTTTTATTTATAAATTCACGAATAATTTGTTAAAGAAAAGGAATGTGCCTGTTTCTGAAACTGCGCTGAGTATTATTGCTAGCATGAAACGTGACTGGATGCAGACCGGGAGGAAGCCCAGTGGATTATGTGGTGCAGCAATATACATGTCTGCTCTTGCACATGGTTTCAAGTGCTCCAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACTAAGCGGTTGGTAGAATTTGAGAATACAGAGTCTGCTAGCTTGACAATTGAGGAGTTGAATACGATGGCAAAAGAGCATGAAAATAATCCAATTAAAATACCAAATGGTGAGTTGAACAAATGTACTTCAAAAGATCTACTATGTGAACACAAGGATAGTGCTGTGCCCCATTTCGCCCTTGGTTTATGTGAAGCATGTTACAAGGAATTTGATAAACTCTCTGGAGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCATGCTGAGAGAGAGAGAATGACAAAATCACTCTCTGAGGAAAGTGCCAATAAATCACATGATTTGGTGGAAGCATCAAATGGTGCATGTGAGAGCCAAATAGAAGAATTACATGCCTCTGAACCAGAAACTATTGGGGCTAATGAGCTCCATGGTATAAAAGATGGTGACCATGATGAGTCTCATAGAGAAGATGATATGAACGCAAAAGCTCATGATGAATCAGAAAGTCTTTCTGATATTGATGACCAGGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCATTTCAAGAAGATTATATGGGAAAATATGAATAGAGAGTATCTTGAGGAACAAGCAGCCAAGGAAGCAGCTGCAGCAGCCGCTAAGAAAGCTTTTGAGGCAAATTTCCAAAACTGTTCTGACGATTTGCTAGCAGCGAGAGAACTTGCTGCATCTGCTGCTGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAACAGAGGCGAGCTCAAGAGACAAAAAATTCGGGTCCTGCTCAATCTGCTGTAGAGGCCACTCGCCAAATGTTGAGAACGAAGAGGCTGAGCTCCAAAGTCAATTATGATCGCTTGGAAGAATTATTTAATGAACCTGTGGCTCCAGAGAATCCCAAGAAAGTACGATTTGAGCTACCCTCTGATAATCATGATAATTTTGAGTCAAAGTTAGAGGACAAACCAAAGGATGATGAACCAGGTTCAGCTGACGAATTTGAGGATGGTGATATGGACGGAGAATATGAAAATACTTTGTATCAAGAAAATGCAGACGAGACATATAACTATGAGGATGATGGTTATAACTATGATGATGATTACTGA 1860 0.4075 MVHCDHCCKNVPGFRLDDGPLCCNVCGKVLEDFHFSQEPTFVKNSAGQSQLSGRYVRTIQSEFSASRQRTLDRAYDDIKYLSFSLGVNDDNVANQALAFYRIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKFTNNLLKKRNVPVSETALSIIASMKRDWMQTGRKPSGLCGAAIYMSALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTESASLTIEELNTMAKEHENNPIKIPNGELNKCTSKDLLCEHKDSAVPHFALGLCEACYKEFDKLSGGLGGGLDPPAFQHAERERMTKSLSEESANKSHDLVEASNGACESQIEELHASEPETIGANELHGIKDGDHDESHREDDMNAKAHDESESLSDIDDQEVDGYLHNEEEKHFKKIIWENMNREYLEEQAAKEAAAAAAKKAFEANFQNCSDDLLAARELAASAAAAVAKSRKEMKQRRAQETKNSGPAQSAVEATRQMLRTKRLSSKVNYDRLEELFNEPVAPENPKKVRFELPSDNHDNFESKLEDKPKDDEPGSADEFEDGDMDGEYENTLYQENADETYNYEDDGYNYDDDY 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1443g00002 619 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Gabi1443g00002 619 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Gabi1443g00002 619 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 532 IPR000812 GO:0006352|GO:0070897
Gabi1443g00002 619 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Gabi1443g00002 619 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Gabi1443g00002 619 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Gabi1443g00002 619 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Gabi1443g00002 619 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Gabi1443g00002 619 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Gabi1443g00002 619 MobiDBLite consensus disorder prediction 549 579 - -
Gabi1443g00002 619 Gene3D - 64 165 - -
Gabi1443g00002 619 MobiDBLite consensus disorder prediction 341 358 - -
Gabi1443g00002 619 MobiDBLite consensus disorder prediction 341 422 - -
Gabi1443g00002 619 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Gabi1443g00002 619 FunFam Transcription factor IIIB subunit 173 262 - -
Gabi1443g00002 619 Gene3D Single helix bin 394 459 - -
Gabi1443g00002 619 Coils Coil 260 280 - -
Gabi1443g00002 619 MobiDBLite consensus disorder prediction 604 619 - -
Gabi1443g00002 619 MobiDBLite consensus disorder prediction 543 619 - -
Gabi1443g00002 619 MobiDBLite consensus disorder prediction 495 517 - -
Gabi1443g00002 619 FunFam Cyclin/Brf1-like TBP-binding protein 409 459 - -
Gabi1443g00002 619 MobiDBLite consensus disorder prediction 386 415 - -
Gabi1443g00002 619 Pfam Brf1-like TBP-binding domain 417 542 IPR011665 -
Gabi1443g00002 619 SMART cyclin_7 76 158 IPR013763 -
Gabi1443g00002 619 SMART cyclin_7 176 259 IPR013763 -
Gabi1443g00002 619 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Gabi1443g00002 619 Gene3D - 173 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1443g00002 Gabi-Chr1443 118926 142998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1443g00002 1 526 Inorganic Solute Cotransporters AT2G01280 43.015 2.26e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1443g00002 K15196 - gmx:100789154 791.571