Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1439g00025 ATGGGTTGCTGCCAGTCATGGTTGCTGAAGGAGACTCATGAGGAAGTTGTATTACACAACAACAACAACAACCACCAGTCTCAATTGCAATTGCAAAGGCAAGCATACCCAGCTGACCTATCTTTCACGGAGTTCTCTTTGACAGAGCTGAAATCCGCCACCAACAATTTCAGCTCAGAGTTTATCGTGTCGGAGAGTGGGGAGAAGGCACAGAACGTCGTTTACAAGGGGCGTCTCCACAACCACAACCAGAACCGTTGGATTGCGATTAAGAAGTTCAGCAAGGGTGCTTGGCCGGATCCCAAGCAATTCGTGGAAGAGGCATCTGGTGTTGGCAAACTCCGACATCCTAGGCTTGCTAATTTGATTGGTTACTGTTGTGATGCCGACGAGAGGCTTCTTGTTGCCGAGTACATGCCTAATGACACTCTCGCTAAGCATCTCTTTCACTGGGAAAATCACACCCTTGAGTGGGTCATGCGCTTAAGAGTCGCTCTCTACATTGCACAGGCTTTACATTATTCTACTTCCGAGGGCCGCCCCTTATACCATGATTTGAATGCTTATAGAGTTCTTTTCGATGAGGAAGGTGATCCACGTCTCTCATGTTTTGGTTTAATGAAGAACAGCAGGGACGGAAAAAGTTATAGCACTAATCTTGCTTACACACCTCCTGAATACTTAAGAAATGGAAGGGTCACCCCTGAAAGTGTCATTTACAGCTTTGGTACAGTTATCCTAGACCTGCTAAGTGGCAAGCACATCCCTCCGAGTCATGCACTTGATATGATACAGGGAAAAAACAACATGCTCTTAATGGATTCACATTTGGAGGGAAAGTTTTCTACAGAAGAGGCAACTGTAGTTGTTAATCTTGCATCTAAATGTTTGCAATATGAACCGAGGGAGCGGCCTGATACAAAGGAGTTGGTCACAACGCTTGCTCCATTGCACACAAAACCTGATGTTCCTTCTCACATCATGCTTGGAATTCCAAAGCACGAGGAGGCTCCAGCAATCCCCCAACGCCCGCTATCAGCGATGGGTGAGGCTTGTTCAAGAATGGACCTCACTGCAATACATCAGATATTGGTTGCAACACACTACAGAGATGATGAAGGAACTAATGAGTTGTCTTTCCAAGAGTGGACACAACAGATGAGAGATATGCTGGAGGCTAGGAAGCGGGGAGACTACGCATTCCGCGACAAGGATTTTAAGACAGCCATTGATAATTATTCGCAGTCTATGCTATCTGTTATGTGA 1266 0.4597 MGCCQSWLLKETHEEVVLHNNNNNHQSQLQLQRQAYPADLSFTEFSLTELKSATNNFSSEFIVSESGEKAQNVVYKGRLHNHNQNRWIAIKKFSKGAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDADERLLVAEYMPNDTLAKHLFHWENHTLEWVMRLRVALYIAQALHYSTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVILDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKELVTTLAPLHTKPDVPSHIMLGIPKHEEAPAIPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQSMLSVM 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1439g00025 421 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 17 416 IPR045845 GO:0004672|GO:0009742
Gabi1439g00025 421 SUPERFAMILY Protein kinase-like (PK-like) 41 323 IPR011009 -
Gabi1439g00025 421 ProSiteProfiles Protein kinase domain profile. 60 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1439g00025 421 FunFam probable serine/threonine-protein kinase At5g41260 140 331 - -
Gabi1439g00025 421 Gene3D Phosphorylase Kinase; domain 1 31 138 - -
Gabi1439g00025 421 Gene3D Transferase(Phosphotransferase) domain 1 140 330 - -
Gabi1439g00025 421 FunFam probable serine/threonine-protein kinase At4g35230 32 138 - -
Gabi1439g00025 421 Pfam Protein tyrosine and serine/threonine kinase 70 314 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1439g00025 Gabi-Chr1439 191573 205887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1439g00025 24 338 Glycoside Hydrolase AT3G07070 32.344 4.34e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi1439g00025 PK_Tyr_Ser-Thr 7.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1439g00025 K14500 - gmx:100808907 730.324