Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1439g00013 ATGTCTGTTAGGGCATGTTTAGAAGCGTGCTCACAGCACCACCTTTGGGGCGGGGGGCAAGGAATAGTTGGAAGGGCTATCACAACCACCAAACCTTGTTTTGCAAATGACATAACAGCATTCACCGAGGCTGAATACCCTCTGGCTCTTGATGCTAACATGTTTGGGTTGCATGCTGCTGTGGCCATTCCCTTCAGGAGTGTCTACGCCGAATCAGCTGATTTTGTCTTAGAATTTTTCCTGCCAAAGGATTGCCATGACAGCCAAGAGCTGAATTCAATATCTATGCTGGTACAGCAAGCTTGCCGGAGTTTGGATCTTGTCAATGTCATGGAGGATGAACTCACGGCGCCACAATTATTATGTTCCAAAGAATCATCCTGGATCTCAGATATGAATATGATGGAGGGGGAAGGTGTCTCTGTCTCCTTGGAGACAAAACAAGAGTTCAAAGTGACAACCAACTCAGGAGACAAGAGACGAACCAAGGCAGAGAAGACAATCAGCTTGGCAGTTCTTCGACAATACTTTGCAGGAAGTCTAAAAGAATACTTGGCGGTAGGAGTATGTCCTACGACTCTAAAAAGGATACGCAGACAACATGGGATTACTAGGTGGCCTTCGAGGAAAATTAAGAAGGTAGGCCACTCTTTAAGGAAACTGCAACTCGTGATCGATTCAGTCCAGGGGGCCGACGGTGCCATTCATATTGGTTCCTTCTATTCCAGTTTTCCAGAGTTGAGTGAATCATTCAAGATCAATGATCATAATTCTAATCAAATTCATGCCTTGTATAACCAAGCAAAATCCCCACCCTCCTCTTCTTCCACTCAAACCTCTAACCCAACTCCTATTCTAATCACAGAGAGAGCTCACACTCACAGTACTGAATTAGTAGAATTGCATGCATCATCAATCCAGGTCCAAGAGTATATTGAGGCTCTCCCTCCCTTGTGTGCTTTTAGAGTCAAAGCTACTTTTGGGGATGATAAAATCCGTTTTAGCTTGCTACCAAATTGGGGATTCAGAGATTTGCAGCAGGAGATTGCAAGACGTTTCAATCTAAACAAGGTCACCAACATTGATCTCAAGTATTTGGATGATGCTGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTGTAAACGCATATATAGATCCTCTCAGAGCCCCACAATTAGACTCTTCCTCTTTCATGCAAATACATTTGGCGGCAGCACCCCCTCCTAA 1230 0.4439 MSVRACLEACSQHHLWGGGQGIVGRAITTTKPCFANDITAFTEAEYPLALDANMFGLHAAVAIPFRSVYAESADFVLEFFLPKDCHDSQELNSISMLVQQACRSLDLVNVMEDELTAPQLLCSKESSWISDMNMMEGEGVSVSLETKQEFKVTTNSGDKRRTKAEKTISLAVLRQYFAGSLKEYLAVGVCPTTLKRIRRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGADGAIHIGSFYSSFPELSESFKINDHNSNQIHALYNQAKSPPSSSSTQTSNPTPILITERAHTHSTELVELHASSIQVQEYIEALPPLCAFRVKATFGDDKIRFSLLPNWGFRDLQQEIARRFNLNKVTNIDLKYLDDAVLLTCDADLEECKRIYRSSQSPTIRLFLFHANTFGGSTPS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1439g00013 409 ProSiteProfiles PB1 domain profile. 320 400 IPR000270 GO:0005515
Gabi1439g00013 409 PANTHER PROTEIN NLP8 6 400 IPR045012 GO:0003700
Gabi1439g00013 409 SUPERFAMILY CAD & PB1 domains 320 401 - -
Gabi1439g00013 409 Pfam PB1 domain 321 399 IPR000270 GO:0005515
Gabi1439g00013 409 CDD PB1_NLP 321 399 IPR034891 -
Gabi1439g00013 409 SMART PB1_new 320 400 IPR000270 GO:0005515
Gabi1439g00013 409 Gene3D - 320 399 - -
Gabi1439g00013 409 Pfam RWP-RK domain 167 214 IPR003035 -
Gabi1439g00013 409 ProSiteProfiles RWP-RK domain profile. 154 234 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1439g00013 Gabi-Chr1439 137362 139217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1439g00013 4 401 NLP Transcription Factor Family AT2G17150 38.534 7.54e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi1439g00013 PB1 2.3e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1439g00013 - - gmx:100798024 460.299