Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1439g00005 ATGCGCCGAGGCGTCGATAACCAAGCATATTATGTATTGGGTCATAAGACTCCCAACATTGGTGATCTATACACTCTTGGCCGCATATTAGGACAGGGACAATTTGGCACCACTTATTTATGCACCGACAATTCCACCTCCATTGAATATGCATGCAAATCCATCTCCAAGAGGAAGTTGATTTCCAATGAGGATGTAGAGGACGTTCGGAGGGAAATTCAGATAATGCACCATTTAGCAGGTTACAAGAACATCGTCACCATCAAGGGTGCTTATGAGGATCCACTCTATGTCCATATTGTCATGGAACTTTGTTCTGGAGGTGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTACACCGAGAGGAAGGCTGCAGAATTGACCAAAATTATTGTTGGTGTTGTTGAGGCATGCCATTCCCTTGGGGTTATGCATAGAGATCTCAAACCCGAAAACTTTTTGTTGGTCAATAAAGATTATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTTTCTGTTTTCTTCAAACCAGGGCAAGTTTTCACTGATGTGGTTGGCAGCCCGTACTATGTAGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTATGGACAGCGGGGGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGAATCAGATCCATGGCCGCTAATATCTGAGAGTGCAAAAGATCTGATTAGAAAGATGCTATGTTCTTGGCCTTCAGAACGGTTGACTGCTCATGAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCAGACCGAGCACTGGATCGTGCTGTTCTCTCTCGTCTCAAACAGTTCTCTGCGATGAATAAGCTAAAGAAGATGGCTTTGCGGGTAATTGCTGAAAGTCTGTCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTAAGGCGATGGATACTGATAACAGTGGTGCAATCACTTTCGACGAACTCAAAGCTGGTTTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTAATCTTATGGAAGCGCAAGGGTGA 1125 0.4382 MRRGVDNQAYYVLGHKTPNIGDLYTLGRILGQGQFGTTYLCTDNSTSIEYACKSISKRKLISNEDVEDVRREIQIMHHLAGYKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDYDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISESAKDLIRKMLCSWPSERLTAHEVLCHPWICENGVAPDRALDRAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRNLMEAQG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1439g00005 374 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 371 - -
Gabi1439g00005 374 CDD STKc_CAMK 24 281 - -
Gabi1439g00005 374 ProSiteProfiles EF-hand calcium-binding domain profile. 325 360 IPR002048 GO:0005509
Gabi1439g00005 374 ProSitePatterns EF-hand calcium-binding domain. 338 350 IPR018247 -
Gabi1439g00005 374 SUPERFAMILY Protein kinase-like (PK-like) 24 292 IPR011009 -
Gabi1439g00005 374 CDD EFh 330 371 IPR002048 GO:0005509
Gabi1439g00005 374 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1439g00005 374 SUPERFAMILY EF-hand 310 371 IPR011992 -
Gabi1439g00005 374 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1439g00005 374 FunFam Calcium-dependent protein kinase 1 26 109 - -
Gabi1439g00005 374 Pfam Protein kinase domain 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1439g00005 374 Gene3D Phosphorylase Kinase; domain 1 26 109 - -
Gabi1439g00005 374 FunFam Calcium-dependent protein kinase 5 110 290 - -
Gabi1439g00005 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Gabi1439g00005 374 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Gabi1439g00005 374 Pfam EF hand 330 356 IPR002048 GO:0005509
Gabi1439g00005 374 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Gabi1439g00005 374 SMART efh_1 329 357 IPR002048 GO:0005509
Gabi1439g00005 374 Gene3D - 294 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1439g00005 Gabi-Chr1439 41220 44827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1439g00005 1 372 EF-hand Containing Proteins AT2G17290 91.935 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1439g00005 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1439g00005 K13412 - gmx:100778173 717.613