Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1439g00004 ATGCGCCGAGGCGTCGATAACCAAGCATATTATGTATTGGGTCATAAGACTCCCAACATTGGTGATCTATACACTCTTGGCCGCATATTAGGACAGGGACAATTTGGCACCACTTATTTATGCACCGACAATTCCACCTCCATTGAATATGCATGCAAATCCATCTCCAAGAGGAAGTTGATTTCCAATGAGGATGTAGAGGACGTTCGGAGGGAAATTCAGATAATGCACCATTTAGCAGGTTACAAGAACATCGTCACCATCAAGGGTGCTTATGAGGATCCACTCTATGTCCATATTGTCATGGAACTTTGTTCTGGAGGTGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTACACCGAGAGGAAGGCTGCAGAATTGACCAAAATTATTGTTGGTGTTGTTGAGGCATGCCATTCCCTTGGGGTTATGCATAGAGATCTCAAACCCGAAAACTTTTTGTTGGTCAATAAAGATTATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTTTCTGTTTTCTTCAAACCAGGGCAAGTTTTCACTGATGTGGTTGGCAGCCCGTACTATGTAGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTATGGACAGCGGGGGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGAATCAGATCCATGGCCGCTAATATCTGAGAGTGCAAAAGATCTGATTAGAAAGATGCTATGTTCTTGGCCTTCAGAACGGTTGACTGCTCATGAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCAGACCGAGCACTGGATCGTGCTGTTCTCTCTCGTCTCAAACAGTTCTCTGCGATGAATAAGCTAAAGAAGATGGCTTTGCGGGTAATTGCTGAAAGTCTGTCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTAAGGCGATGGATACTGATAACAGTGGTGCAATCACTTTCGACGAACTCAAAGCTGGTTTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTAATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACTATAGATTATGGGGAGTTTATTGCCGCAACAGTTCATCTTAACAAACTAGAGCGTGAGGAACATCTTATTGCAGCATTCCGATATTTTGACAAGGATGGGAGTGGTTATATTACGGTTGATGAACTTCAACACGCCTGTGCAGAACATAAAATGACTGATGTTTTTCTTGAAGATATTATTAGGGAAGTGGATCAAGATAATGATGGAAGGATAGACTACGGTGAATTTGTTGCCATGATGCAGAAAGGCAATGCTGGAATCGGAAGGAGGACTATGCGCAATAGTCTCAATTTGAGTATGAGAGATGCACCAAGTGCTCATTAG 1464 0.4303 MRRGVDNQAYYVLGHKTPNIGDLYTLGRILGQGQFGTTYLCTDNSTSIEYACKSISKRKLISNEDVEDVRREIQIMHHLAGYKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDYDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISESAKDLIRKMLCSWPSERLTAHEVLCHPWICENGVAPDRALDRAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRNLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFRYFDKDGSGYITVDELQHACAEHKMTDVFLEDIIREVDQDNDGRIDYGEFVAMMQKGNAGIGRRTMRNSLNLSMRDAPSAH 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1439g00004 487 FunFam Calcium-dependent protein kinase 1 26 109 - -
Gabi1439g00004 487 Pfam EF-hand domain pair 330 390 IPR002048 GO:0005509
Gabi1439g00004 487 Pfam EF-hand domain pair 400 461 IPR002048 GO:0005509
Gabi1439g00004 487 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Gabi1439g00004 487 Gene3D Phosphorylase Kinase; domain 1 26 109 - -
Gabi1439g00004 487 CDD STKc_CAMK 24 281 - -
Gabi1439g00004 487 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Gabi1439g00004 487 FunFam Calcium-dependent protein kinase 5 110 290 - -
Gabi1439g00004 487 Pfam Protein kinase domain 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1439g00004 487 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gabi1439g00004 487 Gene3D - 294 464 - -
Gabi1439g00004 487 ProSiteProfiles EF-hand calcium-binding domain profile. 325 360 IPR002048 GO:0005509
Gabi1439g00004 487 ProSitePatterns EF-hand calcium-binding domain. 338 350 IPR018247 -
Gabi1439g00004 487 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Gabi1439g00004 487 ProSiteProfiles EF-hand calcium-binding domain profile. 436 466 IPR002048 GO:0005509
Gabi1439g00004 487 SUPERFAMILY Protein kinase-like (PK-like) 24 292 IPR011009 -
Gabi1439g00004 487 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1439g00004 487 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1439g00004 487 SMART efh_1 365 393 IPR002048 GO:0005509
Gabi1439g00004 487 SMART efh_1 329 357 IPR002048 GO:0005509
Gabi1439g00004 487 SMART efh_1 435 463 IPR002048 GO:0005509
Gabi1439g00004 487 SMART efh_1 401 429 IPR002048 GO:0005509
Gabi1439g00004 487 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 456 - -
Gabi1439g00004 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Gabi1439g00004 487 CDD EFh 401 461 IPR002048 GO:0005509
Gabi1439g00004 487 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Gabi1439g00004 487 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Gabi1439g00004 487 SUPERFAMILY EF-hand 322 462 IPR011992 -
Gabi1439g00004 487 FunFam Calcium-dependent protein kinase 1 290 464 - -
Gabi1439g00004 487 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1439g00004 Gabi-Chr1439 35927 44824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1439g00004 1 482 EF-hand Containing Proteins AT2G17290 90.664 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1439g00004 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1439g00004 K13412 - gmx:100778173 931.784