Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1438g00014 ATGGAAGCCACCATTCCATTCCTCAACGATCTACCACCCAACAAGAGACTGAGACTCATGCAAAAGCAACAACACCATAGTTCATGCTCACCCTTACCAGCCAAGAAACGCAAGGAGTCTCGAAACCCCACGTTTCTTGATGACCCACCATCACCTCCTCAACCCTCTAACACTGTTTATTCTCTACCCGCTAAAAAAAGGGTATACGCCCTTCAATCCCATCACCTCGCTCCCAACGACGTCGTTTCGCGATCCTTTGACCTCAACAATGAGCCCATCAACGAGGCCCAATTATCCCCCGAAAAAGCCCAACAAGAAGAAAACATCAACGATGATAATAATAGCGATGATGATGGGATTGTATGCTGTGTGTGCCAGAGCACCGATGGTGACCCTGCGGATCCAATCGTTCTATGCGACGGGTGTGACGTCATGGTGCACGCTTCATGCTATGGGAACCCACTCTCAAAGGGTGTCCCAGATGGTGACTGGTTCTGCGAACGGTGTCGTTTCAGCGAGGGTGAGGAAAAGGGTGATTTTGTTTGTTGTTCGCTGTGCCCAGTGAAGGAGGGTGCAATGAAACGCACCACGGATCAGCGTTGGGCACACGTGGTGTGCGCGCTGTTGGTTCCAGAGGTGTTTTTCTTGGACTCAGAAGGAAGGGAAGGGATCGATTGCTCAAAGATTCCAAAGAAGAGGTGGTTGGAGAAGTGTTATGTTTGTGGTTCTTGTGATGGTTGTGCTTTGGTTTGCTCTGAGCCTAAGTGTGGTTTGGCTTTTCATGTTACTTGTGGCCTCAGAGAGGATCTTTGTATTGAGTATAAGGAAGGGAAGAAGGGTGCCACCATTGTTGCTGGGTTCTGCAAAACCCACACTCAAATATGGGATAAGCAACAGCAATCGGGGAAATACAAAATTGTTGCCGTCGATGATAAGTAG 939 0.4878 MEATIPFLNDLPPNKRLRLMQKQQHHSSCSPLPAKKRKESRNPTFLDDPPSPPQPSNTVYSLPAKKRVYALQSHHLAPNDVVSRSFDLNNEPINEAQLSPEKAQQEENINDDNNSDDDGIVCCVCQSTDGDPADPIVLCDGCDVMVHASCYGNPLSKGVPDGDWFCERCRFSEGEEKGDFVCCSLCPVKEGAMKRTTDQRWAHVVCALLVPEVFFLDSEGREGIDCSKIPKKRWLEKCYVCGSCDGCALVCSEPKCGLAFHVTCGLREDLCIEYKEGKKGATIVAGFCKTHTQIWDKQQQSGKYKIVAVDDK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1438g00014 312 MobiDBLite consensus disorder prediction 20 58 - -
Gabi1438g00014 312 SUPERFAMILY FYVE/PHD zinc finger 108 172 IPR011011 -
Gabi1438g00014 312 CDD PHD_BRPF_JADE_like 121 169 - -
Gabi1438g00014 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 294 IPR013083 -
Gabi1438g00014 312 PANTHER PHD FINGER PROTEINS 46 292 - -
Gabi1438g00014 312 SMART PHD_3 121 170 IPR001965 -
Gabi1438g00014 312 SMART PHD_3 237 292 IPR001965 -
Gabi1438g00014 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 178 IPR013083 -
Gabi1438g00014 312 CDD ePHD 183 291 - -
Gabi1438g00014 312 Pfam PHD-finger 122 171 IPR019787 -
Gabi1438g00014 312 ProSiteProfiles Zinc finger PHD-type profile. 119 172 IPR019787 -
Gabi1438g00014 312 Pfam PHD-zinc-finger like domain 183 291 - -
Gabi1438g00014 312 ProSitePatterns Zinc finger PHD-type signature. 122 169 IPR019786 -
Gabi1438g00014 312 ProSiteProfiles Extended PHD (ePHD) domain profile. 180 292 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1438g00014 Gabi-Chr1438 195353 197483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1438g00014 19 311 C2H2 Transcription Factor Family AT3G14740 50.769 1.33e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1438g00014 zf-HC5HC2H_2 2.4e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1438g00014 K11380 - gmx:100802652 419.468