Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1438g00008 ATGCCTGGGAATAAGTATAACGGTAGTTCCAACCATATACCAGGTCGTATTGAACGACTTTTAAGAGATAGAGAGTTAAGAAAAAGCAGCAGAATATCTGAGTCCATTGAGAATAATAATAATAATAGTAATAATAATAATAATAGGGTTACTGAACTTTATGAGCATGACCAGCGCTTAAGAGAAGATGAAAACAACTTAGATGATGTTGAACGGTTACTGGAAGGGGTTGCAGCAACAAGGTTGTGTAGTGAGGGATATGAAAGGAAAGATGGGAAGCCTTTTAGACAAAGGCTTTTGGTTGTGGCTAACAGGTTGCCAGTTTCAGCTAATAGGAAAGGTGAGGATTCTTGGTCTTTGGAGATGAGTTCTGGTGGATTAGTGACCGCTCTTTTAGGTGTGAAGGAGTTTGAGGCACGGTGGATAGGTTGGGCTGGTGTCAATGTTCCAGATGAGATTGGACAGAAGACACTTACTGAAGCATTGGCTGAAAAGAGGTGTATACCTGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGGTATTGCAACAACATCTTGTGGCCCCTTTTCCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACACGCAGTTTCCAGTCTCAGTATGCAGCGTATGAGAAAGCAAACCAAATGTTTGCTGATGTTGTGAACAAACACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCTTAAAGAAATATAACAACAATATGAAAGTCGGATGGTTTCTCCACACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCGTCTCGTTCAGAGATCCTGCATTCCGTTCTTGCAGCTGACTTAGTTGGTTTTCACACCTACGATTATGCTAGACATTTTGTTAGTGCTTGTACTCGTATCCTTGGACTTGAGGGTACACCTGATGGGGTTGAGTATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCAGAACGATTTATACGTGCACTTGACCTTCCACCAGTACAGGAACACATCAAAGAATTACTAGGAAGATTTGAAGGCAGAAAGGTAATGTTAGGCGTTGATCGCCTTGACATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATGCTTATTGGCGTGATAAAGTCGTTTTGCTTCAAATCGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGAATCAATGGCAGATTTGGATCATTGACTGCTGTTCCTATACATCACCTGGATCGCTCTCTTGACTTCCATGCACTATGTGCTTTATATGCTGTTACGGATGTAGCACTAGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCAGCACAGTCTCTCGGTGCTGGGGCAATTCTTGTCAACCCTTGGAACATCACAGAAGTCGCTGATGCAATTGCCAGAGCTCTAAATATGCCATCTGTGGAAAGAGAAAAGAGACACAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACTTTTGTAAGCGAACTAAATGATACTGTTATTGAGGCACAACTAAGGACAAAACAAGTTCCGCCCCGGCTTCCAACCAAGACTGCAATGGAACGTTTTCTGCAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAAGAAATGGAACTTAAGGTGCATCCAGAATTGAGAAAACCCTTGACAGCACTTTGCAGTGACCCAAATACCACTGTTGTTGTGCTCAGTGGAAGTAGTAGAAATGTCCTAGATAATAACTTCAAAGAATATGACATGTGGTTGGCAGCAGAGAATGGGATGTTTTTACACCCTTCAAAGGGTGAATGGATGACAACAATGCCAGAACATCTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTACTTCAGAGAAAGAACACCTCGATCATATTTTGAAGAAAGGGAGGCTTCACTTGTATGGAATTACAAATACGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGAGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCTTCAGTTGATGTTGTTCAAGGGAGTCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACAAAGGGTGCCGCTATTGACCGCATCCTGGGTGAGATAGTCCACAGTAAATCCATGACATCACCAATTGATTATGTTCTTTGTATAGGACATTTTCTGGGGAAGGATGAAGATATTTATGCCTTTTTTGAGCCTGATCTTCCTTCTATTGGTGTGGGTCTTCCACGAAGCAAAGTAACAGATGGAGTTAAGTTTCCTGTTGAGAAGAGACCATCTTTGAAGATCCCAGCTAGTACAAATGGACCAAAGTCATCTCAAAATAAGGCACAGCGACCAGTGTCGAATTCTGAGAAGAAAACGAGTAACCATATCTGCAATGCACCATGGCAACCAGCTCCTGAAAAGGTATCATGGAACGTCCTTGACCTTAAGAAAGAGAATTACTTCTCATGTGCTGTTGGGCGAACACGAACAAAAGCTCGGTATACACTTGGAACCTCAGATGATGTTGTTGCATTTCTGATGGAACTAGCGGATGCATCTTTGAACTCTTTACCACCGAGTTAA 2808 0.4177 MPGNKYNGSSNHIPGRIERLLRDRELRKSSRISESIENNNNNSNNNNNRVTELYEHDQRLREDENNLDDVERLLEGVAATRLCSEGYERKDGKPFRQRLLVVANRLPVSANRKGEDSWSLEMSSGGLVTALLGVKEFEARWIGWAGVNVPDEIGQKTLTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQYAAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKYNNNMKVGWFLHTPFPSSEIHRTLPSRSEILHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPDGVEYQGKLTRVAAFPIGIDSERFIRALDLPPVQEHIKELLGRFEGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVADAIARALNMPSVEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTKQVPPRLPTKTAMERFLQSTNRLLILGFNGTLTEPVEKTGDQIKEMELKVHPELRKPLTALCSDPNTTVVVLSGSSRNVLDNNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWVDSVKHVFEYFRERTPRSYFEEREASLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYAFFEPDLPSIGVGLPRSKVTDGVKFPVEKRPSLKIPASTNGPKSSQNKAQRPVSNSEKKTSNHICNAPWQPAPEKVSWNVLDLKKENYFSCAVGRTRTKARYTLGTSDDVVAFLMELADASLNSLPPS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1438g00008 935 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 98 563 IPR012766 GO:0003825|GO:0005992
Gabi1438g00008 935 NCBIfam trehalose-phosphatase 594 808 IPR003337 GO:0003824|GO:0005992
Gabi1438g00008 935 MobiDBLite consensus disorder prediction 837 873 - -
Gabi1438g00008 935 CDD HAD_TPP 596 827 - -
Gabi1438g00008 935 Gene3D - 598 820 IPR023214 -
Gabi1438g00008 935 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 90 344 - -
Gabi1438g00008 935 Pfam Trehalose-phosphatase 601 820 IPR003337 GO:0003824|GO:0005992
Gabi1438g00008 935 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 97 565 - -
Gabi1438g00008 935 SUPERFAMILY HAD-like 595 924 IPR036412 -
Gabi1438g00008 935 Pfam Glycosyltransferase family 20 98 563 IPR001830 GO:0003824|GO:0005992
Gabi1438g00008 935 MobiDBLite consensus disorder prediction 844 873 - -
Gabi1438g00008 935 FunFam Alpha,alpha-trehalose-phosphate synthase 619 690 - -
Gabi1438g00008 935 Gene3D - 685 765 - -
Gabi1438g00008 935 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 685 765 - -
Gabi1438g00008 935 Gene3D Glycogen Phosphorylase B; 90 344 - -
Gabi1438g00008 935 Coils Coil 53 80 - -
Gabi1438g00008 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 90 926 IPR001830 GO:0003824|GO:0005992
Gabi1438g00008 935 Gene3D Glycogen Phosphorylase B; 345 548 - -
Gabi1438g00008 935 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 345 547 - -
Gabi1438g00008 935 CDD GT20_TPS 98 563 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1438g00008 Gabi-Chr1438 58934 81138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1438g00008 1 928 Trehalose Biosynthesis Gene Families AT1G78580 76.744 0.0 1466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1438g00008 K16055 - gmx:100797320 1604.34