Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1438g00006 ATGCCTGGGAATAAGTATAACGGTAGTTCCAACCATATACCAGGTCGTATTGAACGACTTTTAAGAGATAGAGAGTTAAGAAAAAGCAGCAGAATATCTGAGTCCATTGAGAATAATAATAATAATAGTAATAATAATAATAATAGGGTTACTGAACTTTATGAGCATGACCAGCGCTTAAGAGAAGATGAAAACAACTTAGATGATGTTGAACGGTTACTGGAAGGGGTTGCAGCAACAAGGTTGTGTAGTGAGGGATATGAAAGGAAAGATGGGAAGCCTTTTAGACAAAGGCTTTTGGTTGTGGCTAACAGGTTGCCAGTTTCAGCTAATAGGAAAGGTGAGGATTCTTGGTCTTTGGAGATGAGTTCTGGTGGATTAGTGACCGCTCTTTTAGGTAAGTGGTTTGAGTTTGAGGCACGGTGGATAGGTTGGGCTGGTGTCAATGTTCCAGATGAGATTGGACAGAAGACACTTACTGAAGCATTGGCTGAAAAGAGGTGTATACCTGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGGTATTGCAACAACATCTTGTGGCCCCTTTTCCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACACGCAGTTTCCAGTCTCAGTATGCAGCGTATGAGAAAGCAAACCAAATGTTTGCTGATGTTGTGAACAAACACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCTTAAAGAAATATAACAACAATATGAAAGTCGGATGGTTTCTCCACACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCGTCTCGTTCAGAGATCCTGCATTCCGTTCTTGCAGCTGACTTAGTTGGTTTTCACACCTACGATTATGCTAGACATTTTGTTAGTGCTTGTACTCGTATCCTTGGACTTGAGGGTACACCTGATGGGGTTGAGTATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCAGAACGATTTATACGTGCACTTGACCTTCCACCAGTACAGGAACACATCAAAGAATTACTAGGAAGATTTGAAGGCAGAAAGGTAATGTTAGGCGTTGATCGCCTTGACATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATGCTTATTGGCGTGATAAAGTCGTTTTGCTTCAAATCGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGAATCAATGGCAGATTTGGATCATTGACTGCTGTTCCTATACATCACCTGGATCGCTCTCTTGACTTCCATGCACTATGTGCTTTATATGCTGTTACGGATGTAGCACTAGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCAGCACAGTCTCTCGGTGCTGGGGCAATTCTTGTCAACCCTTGGAACATCACAGAAGTCGCTGATGCAATTGCCAGAGCTCTAAATATGCCATCTGTGGAAAGAGAAAAGAGACACAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACTTTTGTAAGCGAACTAAATGATACTGTTATTGAGGCACAACTAAGGACAAAACAAGTTCCGCCCCGGCTTCCAACCAAGACTGCAATGGAACGTTTTCTGCAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAAGAAATGGAACTTAAGGTGCATCCAGAATTGAGAAAACCCTTGACAGCACTTTGCAGTGACCCAAATACCACTGTTGTTGTGCTCAGTGGAAGTAGTAGAAATGTCCTAGATAATAACTTCAAAGAATATGACATGTGGTTGGCAGCAGAGAATGGGATGTTTTTACACCCTTCAAAGGGTGAATGGATGACAACAATGCCAGAACATCTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTACTTCAGAGAAAGAACACCTCGATCATATTTTGAAGAAAGGGAGGCTTCACTTGTATGGAATTACAAATACGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGAGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCTTCAGTTGATGTTGTTCAAGGGAGTCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACAAAGGGTGCCGCTATTGACCGCATCCTGGGTGAGATAGTCCACAGTAAATCCATGACATCACCAATTGATTATGTTCTTTGTATAGGACATTTTCTGGGGAAGGATGAAGATATTTATGCCTTTTTTGAGCCTGATCTTCCTTCTATTGGTGTATCATGGAACGTCCTTGACCTTAAGAAAGAGAATTACTTCTCATGTGCTGTTGGGCGAACACGAACAAAAGCTCGGTATACACTTGGAACCTCAGATGATGTTGTTGCATTTCTGATGGAACTAGCGGATGCATCTTTGAACTCTTTACCACCGAGTTAA 2619 0.4154 MPGNKYNGSSNHIPGRIERLLRDRELRKSSRISESIENNNNNSNNNNNRVTELYEHDQRLREDENNLDDVERLLEGVAATRLCSEGYERKDGKPFRQRLLVVANRLPVSANRKGEDSWSLEMSSGGLVTALLGKWFEFEARWIGWAGVNVPDEIGQKTLTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQYAAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKYNNNMKVGWFLHTPFPSSEIHRTLPSRSEILHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPDGVEYQGKLTRVAAFPIGIDSERFIRALDLPPVQEHIKELLGRFEGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVADAIARALNMPSVEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTKQVPPRLPTKTAMERFLQSTNRLLILGFNGTLTEPVEKTGDQIKEMELKVHPELRKPLTALCSDPNTTVVVLSGSSRNVLDNNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWVDSVKHVFEYFRERTPRSYFEEREASLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYAFFEPDLPSIGVSWNVLDLKKENYFSCAVGRTRTKARYTLGTSDDVVAFLMELADASLNSLPPS 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1438g00006 872 CDD HAD_TPP 597 856 - -
Gabi1438g00006 872 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 90 345 - -
Gabi1438g00006 872 Pfam Trehalose-phosphatase 602 848 IPR003337 GO:0003824|GO:0005992
Gabi1438g00006 872 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 97 566 - -
Gabi1438g00006 872 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 98 564 IPR012766 GO:0003825|GO:0005992
Gabi1438g00006 872 Gene3D Glycogen Phosphorylase B; 90 345 - -
Gabi1438g00006 872 FunFam Alpha,alpha-trehalose-phosphate synthase 620 691 - -
Gabi1438g00006 872 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 346 548 - -
Gabi1438g00006 872 NCBIfam trehalose-phosphatase 595 861 IPR003337 GO:0003824|GO:0005992
Gabi1438g00006 872 Gene3D Glycogen Phosphorylase B; 346 549 - -
Gabi1438g00006 872 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 90 863 IPR001830 GO:0003824|GO:0005992
Gabi1438g00006 872 CDD GT20_TPS 98 564 IPR001830 GO:0003824|GO:0005992
Gabi1438g00006 872 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 686 766 - -
Gabi1438g00006 872 Pfam Glycosyltransferase family 20 98 564 IPR001830 GO:0003824|GO:0005992
Gabi1438g00006 872 SUPERFAMILY HAD-like 596 861 IPR036412 -
Gabi1438g00006 872 Gene3D - 599 798 IPR023214 -
Gabi1438g00006 872 Gene3D - 686 766 - -
Gabi1438g00006 872 Coils Coil 53 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1438g00006 Gabi-Chr1438 58934 81138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1438g00006 820 865 Trehalose Biosynthesis Gene Families AT1G78580 76.087 4.06e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1438g00006 K16055 - gmx:100820010 1430.23