Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1438g00002 ATGTCTTCCTCAAGATCCTTGCCCCAAAAACGCAGAGAGAAAATAGATGGATTTGGATTGAAAGGATATGTCACCAGAGAGCCATTTTATAAAAAAGTTTTGCAGTCTCCGTCTAGTTTTATGCTAGGCATTATTCTTCTTCTCCTGTTTTTTCTGCCCCTGCACAACAATTGTATGTGTCAATTCGAATGGTTTGGTTTCTTCCCACCCATCTCTTCCTCCGGTTCCTTGCTCCAAGGTCGCTTGCCACCTAAACGCGGACAGAAAGTAGATGAATTCCCAGGGATCCATGAAGTGTTCTTGAGTTTCAGAGGGGAAGACACTCGTGCATCATTCATTTCACATCTCTATTCCTCTCTTCAAAATGCCGGAATCACTGTTTTCATTGATGATGATTCGCTTCAGATGGGAGATCAGATTTCCACCTCACTAATGGGAGCAATCGAAAGCTCTGAAATCTCTGTTATTGTTTTCTCAAGAAATTATGCAAATTCAAGATGGTGTCTACAAGAGTTGGAAAAAATAATGGAGTGTCACAGAACCATAGGCCAGGTGGTTCTGCCTGTGTTCTATGATGTAGATCCCTCAGAAGTACGTCATCAAACAGGTAAGTTTGGAAAAGCATTTCAAAAACATTTGAACAGAATTTCAACGGAGGAAGACAAGGTGCTGCGTTGGAGGATGGCGCTCCGTGATGCTAGCGGCATTTCAGGGTTTGCAGTCCTAGATTCCAGGAATGAGAGTGAGGCTATCGAGAAGGTTGTTGAAAATGTTACACGTTTGCTAGACAAGACAGACTTGTTCATTGCTGATAATCCAGTGGGAGTAGAAACTCGAGTCCAAGATATGATTCAGTTGCTAGATAACCAACAATCAAATGATGTTTTACTACTAGGGATGTGGGGAATGGGAGGAATTGGTAAAACAAGCATTGCGAAAGCCATTTACAATACAATTGGCCGCAGTTTTGAGGGTAGGAGCTTCCTCGCACATATTAGGCAAGTTTGGGAGCAAGATGGTGGCCAAATGTGTTTACAAGAACAACTTCTCTTTGATATCTACAAAAGATCAAAAACAAAGATACATAATGTTGAATCAGGGAAAAATATATTAAAGGAAAGACTTTGCCATAAAAGAGTACTTCTTGTACTTGACGATGTGAATAAATTGGACCAACTGAATGCTTTGTGTGGAAGTCGTAAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCCAGGATAAGCATATACTTGCAGGGAATAGAGTTGACCAAGTTTACAGAATGAAAGAAATGGATGAAAGTGAATCTGTTGAACTTTTTAGTTGGCATGCATTCAAGAAGTCGAGTCCTAGAGAAGATTTTGCTGGACTTTCCAGAAATGTAGTTGCGTATTCTGGGGGATTGCCTCTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGACAGGGAGGTAATAGAGTGGAAGAGTGTATTGGAGAAACTCAAAAGAATTCCCAATGATCAAGTACAGAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGATACAGAGAAAGAAATATTCCTTGATATAGCTTGTTTTTTTATTGGGATGGACCGAAATGATGTCATACATATATTAAATGGCTGTGGACATTTTGCAGAGATCGGAATTAGTGTCCTTGTTGAGCGAAGCCTGGTAACTTTTGATGATAGGAACCAGCTTGGAATGCATGATTTGCTAAGAGACATGGGAAGAGAAATCATTCGTGAGAAATCACCAAAGGAGCCTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTGCTTGATGTATTATCAGAACAAACTGGCACAAAAGCGGTTGAGGGACTGGCTTTGAAGTTGCCAAGAACTAATACAAAATGTTTGAGTACTAAAGCGTTTAAAAAGATGAAGAAACTCAGATTGCTTCAACTTGCCGGTATACAACTTGATGGAGATTTTGAATATTTGTCAAGAAATCTGAGATGGCTGCATTGGCATGGATTTCCTTTAACATGCATACCTGCAAACTTCTATCAAGGAAATTTAGTTTCCATTGAGCTAGAAAACAGCAATGTCAAACTTGTGTGGCAAGAGGCCCAGTTGATGGAGAAGCTGAAAATTCTCAATCTTAGCCATTCTCGTTATTTGACACAGACCCCAGACTTTTCAAACTTGCCTAATCTCGAAAAGCTAGTACTCACAGATTGTCCAAGCTTGTGTGAGGTTTCCGATACCATTGGACATCTTAATAAAGTTCTTCTAATAAATCTGAAAGACTGTACTAGCCTTCGTAAACTTACAAGAAGCATCTATAAGTTGAAATCTCTGAAAACTCTCATTCTTTCTGGATGTTCAATGATTGACAAGTTGGAAGAGGACTTGGAACAAATGGAATCCTTGACCACCCTGATTGCGGATAAAACTGCAATAACAAGAGTGCCCTTTGCAATAGTAAGGTTAAAAAGCATTGGATATATTTCTCTGTGCGGCTATGAAGGATTCTCACGGGACGTGTTTCCTTCCATCATTTGGTCTTGGATGTCACCAACAAATAATCTCTCATTTCTAGTTCCAACATTTGCGGGCATGTCATCTCTCGTTTCTTTAAATGTACCAAATAGTAGTTCCTACAATCTATCATCTATTTCCAAGGACCTTCCAAAGCTTCGTAGTCTTTGGGTGGAGTGCGGCTCAGAACTTCAATTATCACGAGATGCAGAAAGAATTTTGGATGCCTTATATGCCACAAATTTTAAGGAATTGGAATCCACTGCAATAATATCAAAAGTATCAAATATGAATACTTCTGCATTAATTGAATGCAGCAGTCAAGTGCACCTTTCAGGATCCAAAAATTCCTTGAAATCTCTTTTGATTCAAATGGGAATGGATTGCCAAGTCACCAATATTCTGAAAGAGACCATTTTACAGAATATGACTATCAGTGAGAGTGGTGGTTGTTTGCTCCCTGGTGATAATTATCCATATTGGTTAACCTTCAAATGCGAAGGTTCTTCTGTAAGTTTCGAAGTCCCTCAAGTGAACGGGCATAACTTGAAGACAATGTTGTGCATTGTCCATTCTTCTACCCCAGACAAGTTAACATCAGATGGTCTTAAAAATGTGTTGGTGATAAATTACACAAAGACCACCATTCAGCTTTACAAGAGAGAAGCATTAGCCTCCTTTGAAGATGAGGAGTGGCAGAGAGTAGCATCAAATATAGAACCTGGTAACAAAGTGATGGTTGTTGTTGTTTTTGAGAATGAATTCTTTGTTAAAAAGACAGCAGTTTATCTCATATATGAAGAACCAATTGATGAAAGAACAGAGCACTGCCATGCACCAGATAAGAATGTTATCGTTTCTAGTGATTATGAAAATGTATGTGGTGTCAGTTGGATCTCTCCTCAAGTGGAGTGGACGGATAACTTTAAACAAAAACAGAAAAGAAGAAGATTCGAGTAA 3483 0.3922 MSSSRSLPQKRREKIDGFGLKGYVTREPFYKKVLQSPSSFMLGIILLLLFFLPLHNNCMCQFEWFGFFPPISSSGSLLQGRLPPKRGQKVDEFPGIHEVFLSFRGEDTRASFISHLYSSLQNAGITVFIDDDSLQMGDQISTSLMGAIESSEISVIVFSRNYANSRWCLQELEKIMECHRTIGQVVLPVFYDVDPSEVRHQTGKFGKAFQKHLNRISTEEDKVLRWRMALRDASGISGFAVLDSRNESEAIEKVVENVTRLLDKTDLFIADNPVGVETRVQDMIQLLDNQQSNDVLLLGMWGMGGIGKTSIAKAIYNTIGRSFEGRSFLAHIRQVWEQDGGQMCLQEQLLFDIYKRSKTKIHNVESGKNILKERLCHKRVLLVLDDVNKLDQLNALCGSRKWFGSGSRIIITTQDKHILAGNRVDQVYRMKEMDESESVELFSWHAFKKSSPREDFAGLSRNVVAYSGGLPLALEVLGSYLFDREVIEWKSVLEKLKRIPNDQVQKKLKISYDGLNDDTEKEIFLDIACFFIGMDRNDVIHILNGCGHFAEIGISVLVERSLVTFDDRNQLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVLDVLSEQTGTKAVEGLALKLPRTNTKCLSTKAFKKMKKLRLLQLAGIQLDGDFEYLSRNLRWLHWHGFPLTCIPANFYQGNLVSIELENSNVKLVWQEAQLMEKLKILNLSHSRYLTQTPDFSNLPNLEKLVLTDCPSLCEVSDTIGHLNKVLLINLKDCTSLRKLTRSIYKLKSLKTLILSGCSMIDKLEEDLEQMESLTTLIADKTAITRVPFAIVRLKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNLSFLVPTFAGMSSLVSLNVPNSSSYNLSSISKDLPKLRSLWVECGSELQLSRDAERILDALYATNFKELESTAIISKVSNMNTSALIECSSQVHLSGSKNSLKSLLIQMGMDCQVTNILKETILQNMTISESGGCLLPGDNYPYWLTFKCEGSSVSFEVPQVNGHNLKTMLCIVHSSTPDKLTSDGLKNVLVINYTKTTIQLYKREALASFEDEEWQRVASNIEPGNKVMVVVVFENEFFVKKTAVYLIYEEPIDERTEHCHAPDKNVIVSSDYENVCGVSWISPQVEWTDNFKQKQKRRRFE 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1438g00002 1160 Pfam NB-ARC domain 277 512 IPR002182 GO:0043531
Gabi1438g00002 1160 Gene3D - 432 516 IPR042197 -
Gabi1438g00002 1160 Gene3D Ribonuclease Inhibitor 608 990 IPR032675 -
Gabi1438g00002 1160 PRINTS Disease resistance protein signature 467 481 - -
Gabi1438g00002 1160 PRINTS Disease resistance protein signature 776 792 - -
Gabi1438g00002 1160 PRINTS Disease resistance protein signature 374 388 - -
Gabi1438g00002 1160 PRINTS Disease resistance protein signature 297 312 - -
Gabi1438g00002 1160 Gene3D - 96 259 IPR035897 -
Gabi1438g00002 1160 Pfam TIR domain 97 260 IPR000157 GO:0007165
Gabi1438g00002 1160 ProSiteProfiles TIR domain profile. 95 262 IPR000157 GO:0007165
Gabi1438g00002 1160 Coils Coil 792 812 - -
Gabi1438g00002 1160 FunFam Disease resistance protein (TIR-NBS-LRR class) 94 264 - -
Gabi1438g00002 1160 SUPERFAMILY Toll/Interleukin receptor TIR domain 94 239 IPR035897 -
Gabi1438g00002 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 527 IPR027417 -
Gabi1438g00002 1160 Gene3D - 260 427 IPR027417 -
Gabi1438g00002 1160 SUPERFAMILY L domain-like 573 984 - -
Gabi1438g00002 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 97 934 IPR044974 GO:0006952
Gabi1438g00002 1160 SMART till_3 96 236 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1438g00002 Gabi-Chr1438 16754 33747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1438g00002 85 825 WRKY Transcription Factor Family AT4G12020 31.421 4.18e-89 315